Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h18
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    28   0.10 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     27   0.31 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     27   0.31 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 428 IDGLSTEHNST-PSFSVNKMGSPGMLVSLVSVTTN 529
           +D +  EH +T P ++V ++  PG+ ++ + +TTN
Sbjct: 408 VDDVFQEHKNTLPQYTVQQLDFPGIEIADIKLTTN 442


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -1

Query: 771 ELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEI 640
           E  E DL+     E  + L ++ +++KY+  L  +E T+P+L I
Sbjct: 80  EAFEVDLEFYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEPILLI 123


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 746 FFKSNSANS*VFLDLFIAVYNFGDRSNFVAFDTFHFLYT 862
           F ++  + S    DL I ++ F D SNF+A +TF  +Y+
Sbjct: 162 FLRTRWSISGTVFDL-INIHLFHDASNFIAMETFPSVYS 199


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 285 QPDYDMDLSDFSITEVEATQYLTLLLIVE 199
           QP    D+SD+    +     LT+ LIVE
Sbjct: 363 QPSEGEDISDYKFRHITEITILTVQLIVE 391


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 795 MKRSKKTYELAEFDLKNLSSLESYETLKIKLALSKY 688
           MK    TY+    DL++L+  E    +++ + L+ Y
Sbjct: 161 MKFGSWTYDGYTVDLRHLAQTEDSNQIEVGIDLTDY 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,377
Number of Sequences: 438
Number of extensions: 4661
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)