Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h16
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0229 + 21093398-21094423                                         89   5e-18
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327...    29   6.9  

>02_04_0229 + 21093398-21094423
          Length = 341

 Score = 89.0 bits (211), Expect = 5e-18
 Identities = 47/142 (33%), Positives = 72/142 (50%)
 Frame = -1

Query: 811 DVALRNLKNCTIGLKGLMGTLHLINLENCIVLSGPVTSSVFVDKCTNCKIVIACQQLRMH 632
           D  L +L +C + LKG    LH+  L++C V  G V  SV ++    C  V+A  Q+R+H
Sbjct: 190 DFTLADLVSCQVYLKGKCRALHVHKLKDCRVFVGAVFGSVLIEDVERCAFVMAAHQIRIH 249

Query: 631 TSTKCDVYLHVTSKGIVEDCSQIRTAPYNLFYDNLEKHYESSSLDRXXXXXXXXXXXXXL 452
            +T  D YL V S+ I+EDC  +R AP+ L Y+ + +    + L+              L
Sbjct: 250 EATATDFYLRVRSRPIIEDCCGVRFAPHALKYEGIGEDLRDAGLEEETGNWANVDDFKWL 309

Query: 451 APDVSSPNWSVLDVSERIDSWD 386
              V SPNW ++   ER+ + D
Sbjct: 310 RA-VQSPNWCLVPEEERLQTID 330


>04_04_1265 -
           32231511-32231813,32231906-32232024,32232511-32232721,
           32232870-32232942,32233329-32233603,32233684-32233831,
           32233906-32234143,32234325-32234457,32234852-32235045,
           32235114-32235218,32235332-32236640
          Length = 1035

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +3

Query: 270 IMLSSPFLVWIFKCCTIAQXXXXXXXXXXCYKGILDHQSSHESILSETSKTD--QFGELT 443
           ++L S FLVW++KC  ++             +GIL + S+   +  E  +     FGE+ 
Sbjct: 457 LLLMSIFLVWLYKCRVLSGKRHQNKVVQK--RGILGYLSASNELGDENLELPFVSFGEIA 514

Query: 444 SGANQLKSSKL 476
           +  N      +
Sbjct: 515 AATNNFSDDNM 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,622,913
Number of Sequences: 37544
Number of extensions: 372510
Number of successful extensions: 757
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)