Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h16
         (925 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058646-1|AAL13875.1|  355|Drosophila melanogaster LD34582p pro...   111   1e-24
AE014134-703|AAN11168.1|  355|Drosophila melanogaster CG31961-PB...   111   1e-24
AE014134-702|AAN11167.1|  355|Drosophila melanogaster CG31961-PA...   111   1e-24

>AY058646-1|AAL13875.1|  355|Drosophila melanogaster LD34582p
           protein.
          Length = 355

 Score =  111 bits (267), Expect = 1e-24
 Identities = 49/133 (36%), Positives = 74/133 (55%)
 Frame = -1

Query: 814 RDVALRNLKNCTIGLKGLMGTLHLINLENCIVLSGPVTSSVFVDKCTNCKIVIACQQLRM 635
           +D+ +  L +C + L+G  G++ +     C +L GP+  S F +   +C + IACQQLR+
Sbjct: 189 QDITISKLNHCLVELQGHPGSVQVSRASKCTLLCGPIARSFFAENLEDCTLSIACQQLRL 248

Query: 634 HTSTKCDVYLHVTSKGIVEDCSQIRTAPYNLFYDNLEKHYESSSLDRXXXXXXXXXXXXX 455
           H+S    +Y+HVT + I+EDC  I    YN  Y  LE  Y +S L++             
Sbjct: 249 HSSRSIRIYMHVTCRAIIEDCKSIEIGEYNYDYSKLEADYLASGLNKAQNNYTDVADFNW 308

Query: 454 LAPDVSSPNWSVL 416
           L+PDV SPNWS+L
Sbjct: 309 LSPDVPSPNWSLL 321


>AE014134-703|AAN11168.1|  355|Drosophila melanogaster CG31961-PB,
           isoform B protein.
          Length = 355

 Score =  111 bits (267), Expect = 1e-24
 Identities = 49/133 (36%), Positives = 74/133 (55%)
 Frame = -1

Query: 814 RDVALRNLKNCTIGLKGLMGTLHLINLENCIVLSGPVTSSVFVDKCTNCKIVIACQQLRM 635
           +D+ +  L +C + L+G  G++ +     C +L GP+  S F +   +C + IACQQLR+
Sbjct: 189 QDITISKLNHCLVELQGHPGSVQVSRASKCTLLCGPIARSFFAENLEDCTLSIACQQLRL 248

Query: 634 HTSTKCDVYLHVTSKGIVEDCSQIRTAPYNLFYDNLEKHYESSSLDRXXXXXXXXXXXXX 455
           H+S    +Y+HVT + I+EDC  I    YN  Y  LE  Y +S L++             
Sbjct: 249 HSSRSIRIYMHVTCRAIIEDCKSIEIGEYNYDYSKLEADYLASGLNKAQNNYTDVADFNW 308

Query: 454 LAPDVSSPNWSVL 416
           L+PDV SPNWS+L
Sbjct: 309 LSPDVPSPNWSLL 321


>AE014134-702|AAN11167.1|  355|Drosophila melanogaster CG31961-PA,
           isoform A protein.
          Length = 355

 Score =  111 bits (267), Expect = 1e-24
 Identities = 49/133 (36%), Positives = 74/133 (55%)
 Frame = -1

Query: 814 RDVALRNLKNCTIGLKGLMGTLHLINLENCIVLSGPVTSSVFVDKCTNCKIVIACQQLRM 635
           +D+ +  L +C + L+G  G++ +     C +L GP+  S F +   +C + IACQQLR+
Sbjct: 189 QDITISKLNHCLVELQGHPGSVQVSRASKCTLLCGPIARSFFAENLEDCTLSIACQQLRL 248

Query: 634 HTSTKCDVYLHVTSKGIVEDCSQIRTAPYNLFYDNLEKHYESSSLDRXXXXXXXXXXXXX 455
           H+S    +Y+HVT + I+EDC  I    YN  Y  LE  Y +S L++             
Sbjct: 249 HSSRSIRIYMHVTCRAIIEDCKSIEIGEYNYDYSKLEADYLASGLNKAQNNYTDVADFNW 308

Query: 454 LAPDVSSPNWSVL 416
           L+PDV SPNWS+L
Sbjct: 309 LSPDVPSPNWSLL 321


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,502,978
Number of Sequences: 53049
Number of extensions: 711215
Number of successful extensions: 1718
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4546383066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)