Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h16
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-20|ABA00160.2|  322|Caenorhabditis elegans Hypothetical...    57   2e-08
AC006672-6|AAK84541.2|  341|Caenorhabditis elegans Hypothetical ...    50   2e-06
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    40   0.002
Z82286-3|CAB05309.1|  781|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U80027-10|AAC48118.3|  295|Caenorhabditis elegans Serpentine rec...    29   6.2  

>AC024859-20|ABA00160.2|  322|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.24 protein.
          Length = 322

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
 Frame = -1

Query: 811 DVALRNLKNCTIGLKGLMGTLHLINLENCIVLSGPVTSSVFVDKCTNCKIVIACQQLRMH 632
           D++L+N+ +C +        +H+ N++N  ++      S+ +  C N  I +A QQ+R+H
Sbjct: 186 DISLKNIDSCRLQFDFEPSIVHIRNIKNSTLIFLRCDRSLLIHDCDNVHIYVAAQQVRIH 245

Query: 631 TSTKCDVYLHVTSKG--IVEDCSQIRTAPYNL 542
           TS   +++LHV ++G  I+ED ++I   PY L
Sbjct: 246 TSQ--NLHLHVATRGAVILEDSTKIFMYPYRL 275


>AC006672-6|AAK84541.2|  341|Caenorhabditis elegans Hypothetical
           protein K08D12.2 protein.
          Length = 341

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
 Frame = -1

Query: 793 LKNCTIG-LKGLMGTLHLI--NLENCIVLSGPVTSSVFVDKCTNCKIVIACQQLRMHTST 623
           ++NCT   +  L  T  +I  +  +C ++ GP   SVFV  C NC I  +CQQLR    T
Sbjct: 74  MENCTDSTILYLYQTSQVIIDDCRHCTIVLGPAAGSVFVRDCANCTIFTSCQQLRTRDCT 133

Query: 622 KCDVYLHVTSKGIVEDCSQIRTAPYNLFYDNLEKHYESSSL 500
              + +   ++ IVE+ S I      + Y  L+    +  L
Sbjct: 134 SIRISILCPTEPIVENSSDIHFFHLAMRYPELKDQMHAVGL 174



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = -1

Query: 811 DVALRNLKNCTIGLKGLMG-TLHLINLENCIVLSGPVTSSVFVDKCTNCKIVI--ACQQL 641
           D  + N+ N T+  +   G  L + N  +  +L    TS V +D C +C IV+  A   +
Sbjct: 51  DFTIANIHNTTLKKESKDGGPLQMENCTDSTILYLYQTSQVIIDDCRHCTIVLGPAAGSV 110

Query: 640 RMHTSTKCDVYLHVTSKGIVEDCSQIR 560
            +     C ++          DC+ IR
Sbjct: 111 FVRDCANCTIFTSCQQLR-TRDCTSIR 136


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = -1

Query: 721 VLSGPVTSSVFVDKCTNCKIVIACQQLRMHTSTKCDVYLHVTSKGIVEDCSQIRTAPYNL 542
           ++ G V   V V  C + +I ++C QL +  S   ++Y     K I+ + S +  AP+N 
Sbjct: 528 IVLGAVRGIVIVKNCQSTRISVSCDQLIVLDSKNIEIYAMSPKKPIIFNSSAVTFAPFNT 587

Query: 541 FYDNLEKHYESS 506
            Y+   +  E +
Sbjct: 588 IYEGQMEFLEEN 599


>Z82286-3|CAB05309.1|  781|Caenorhabditis elegans Hypothetical
           protein W02A2.6 protein.
          Length = 781

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 415 LKPTNLVNLHQELTN*NHPNYPSYLNF 495
           L P N +N+H+EL N     YP ++NF
Sbjct: 706 LLPNNRLNIHKELLNEAEARYPEWVNF 732


>U80027-10|AAC48118.3|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 5 protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/70 (18%), Positives = 31/70 (44%)
 Frame = -1

Query: 742 INLENCIVLSGPVTSSVFVDKCTNCKIVIACQQLRMHTSTKCDVYLHVTSKGIVEDCSQI 563
           I++E  + +  P+   ++ D C +  I++    + M  +    ++  +    I  DC  +
Sbjct: 108 ISIERVLAIYTPIMFHIYRDLCPSIIILLFAITMGMFENLILYIFCSINISAIPRDCGVL 167

Query: 562 RTAPYNLFYD 533
           R +    F+D
Sbjct: 168 RCSLDTCFFD 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,440,675
Number of Sequences: 27780
Number of extensions: 392096
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)