Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12h15
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 40 0.003
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 35 0.10
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 33 0.23
08_01_0870 - 8491020-8491109,8491523-8491660,8492442-8492568,849... 30 2.2
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 30 2.9
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 3.8
03_02_0227 + 6576333-6577769 29 5.0
01_06_1034 + 33962813-33963802 29 5.0
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 6.6
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 29 6.6
04_01_0374 + 4914864-4914947,4915094-4915217,4921146-4921471,492... 28 8.8
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 28 8.8
02_01_0731 - 5471795-5471811,5471953-5472035,5472235-5472331,547... 28 8.8
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 39.9 bits (89), Expect = 0.003
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = -1
Query: 670 LNSLGALFATKQGLLKIL-MRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTN 494
+ SL FA +Q + L + LN N S ++ + E D L++ ++++ + V +N
Sbjct: 132 MKSLQEAFAVQQARSESLSLALNGQNSSEDVI-VALENHNDYLKEVVDNLRQAVSIINRK 190
Query: 493 SEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTV 329
EK++ E FKN+ + + EL+ + L+ + + + ++ G++
Sbjct: 191 HEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQTGGGSL 245
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 34.7 bits (76), Expect = 0.10
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = -1
Query: 571 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 392
+ E DL DKI + K L + ++ + + ND+ +FEQ + + + + +L
Sbjct: 709 ELESTNGDLNDKIAVLQKEGSSLASELQQLEASFKNLGNDLEQKFEQISV-MQKNNEELE 767
Query: 391 MLQSAEKLKTAIVTESKNGTV 329
+ S + + A+V E KN V
Sbjct: 768 LANSNLQNELAMVQEQKNEAV 788
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -1
Query: 808 AKFYNVIDFCKGLE-IAHDDILDCNWD 731
A+FYNV C +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330
>08_01_0870 -
8491020-8491109,8491523-8491660,8492442-8492568,
8492667-8492801,8493262-8493731
Length = 319
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = -1
Query: 586 ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNEL 407
+L + E +RD + + +++L + +K T + E FKNDV +Q E ++ +
Sbjct: 166 SLRRAEVEEKRDKVHKESKALLDYTRKAITKLTELKKMLEKFKNDVEK--QQAE-QMTDW 222
Query: 406 DAKLNMLQSAEK 371
KL M+ S E+
Sbjct: 223 QTKLVMMDSKER 234
>08_01_0501 +
4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -1
Query: 586 ALLHLQTEGERDDLRDKIESVLKHVK-KLNTNSEKFMVTHETFKNDVGNRFEQFELRLNE 410
AL L+T E D L+ + ++ + + + F+V + +++ F+ F +L +
Sbjct: 107 ALEMLETVEELDPLQKEWRDTVRELAYDIEDCIDPFLVLVDQKQDEQSTFFKGFSYKLKK 166
Query: 409 LDAKLNMLQSAEKLKTAIVTESK 341
+ A+ + E+LKT ++ SK
Sbjct: 167 MKARHEISNEIEELKTRVIEASK 189
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 514 HVLKQIQFCRANHHARLQFEGAATRCFCCQ 603
H+LK++ C+ +H R QFE FCC+
Sbjct: 243 HLLKKVPDCKHSHAIRFQFESPG---FCCR 269
>03_02_0227 + 6576333-6577769
Length = 478
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = -1
Query: 331 VTFPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHPNPLL 152
V PR + F + DR+ ++ GQ+++F R R+ V+ V P P +
Sbjct: 5 VPLPRRPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERY--GSTVVRINVPPGPFM 62
Query: 151 A-----IQCINEKLYDKHYKIRKIAKR 86
A + ++ K + + + K+ KR
Sbjct: 63 ARDPRVVALLDAKSFPVLFDVAKVEKR 89
>01_06_1034 + 33962813-33963802
Length = 329
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 679 WISACEK*FRLNGKLDRCPNCN 744
W AC + R++G+ CPNCN
Sbjct: 8 WCYACRRPIRVSGQDITCPNCN 29
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 736 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 611
+D D + LNE++ ++K K+DL L+ K L ++ R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 5 LLYMXFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEF-FVNTLNCQQGIWVHTVI 181
LL + +++ L NY ++Y F + + F EF F + + +W H
Sbjct: 547 LLALSKLVELLDPQLHNYFRKNDCLNYFFCFRWVLIQFKREFSFDQIMLLWEVLWTHYWS 606
Query: 182 EHFHVVFKAHFSLAKMSLLAQNKSEFDAVV 271
EHFH+ S + + +FD ++
Sbjct: 607 EHFHLYLCVAILKRYRSRIIGEQMDFDTLL 636
>04_01_0374 +
4914864-4914947,4915094-4915217,4921146-4921471,
4921527-4921658,4921824-4922362,4922445-4922597,
4922695-4922995
Length = 552
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -1
Query: 208 RFEDDM--EVLYDGVHPNPLLAIQCINE-KLYDKHYKIRKIAKRVIDVDCTHNVVKEVIQ 38
R EDD+ + L HP I C N Y Y+ RK++K D + EVIQ
Sbjct: 47 RREDDILTKALGTKGHPGRTRGIGCYNGLPQYSSQYRKRKVSKEERDACLKAELKVEVIQ 106
Query: 37 EV 32
E+
Sbjct: 107 EL 108
>03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 28.3 bits (60), Expect = 8.8
Identities = 22/91 (24%), Positives = 43/91 (47%)
Frame = -1
Query: 538 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTA 359
++E L+ + SEK ET + ++ E R EL+ ++ +LQS ++ TA
Sbjct: 816 ELEKSLEELTSKLVASEKSNSLAETQLKCMAESYKSLESRKAELENEIKVLQSKIEVLTA 875
Query: 358 IVTESKNGTVTFPRDITKHQHLAIFSERIDD 266
+ + + DIT+++ L ER ++
Sbjct: 876 ELDDERQ---NHQEDITRYRDLEEKIERYEN 903
>02_01_0731 -
5471795-5471811,5471953-5472035,5472235-5472331,
5472460-5472652,5472782-5472849,5473345-5473639
Length = 250
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 371 FFGRLQHVKFGVEFVQTQFKLLKPVAHIVLER 466
FFG L H+K +E FKLL ++ LER
Sbjct: 27 FFGSLSHLKNDLECYLISFKLLPKYRNLHLER 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,485,960
Number of Sequences: 37544
Number of extensions: 465089
Number of successful extensions: 1470
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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