Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h11
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   1.9  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.5  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   10.0 
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   10.0 
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    25   10.0 
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   10.0 

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect(2) = 1.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 769 SEDENVLDFIIED 731
           SED+N+LDFI+ D
Sbjct: 624 SEDDNLLDFILRD 636



 Score = 21.0 bits (42), Expect(2) = 1.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 796 DIIVNAQINSEDEN 755
           ++IVN +I S DEN
Sbjct: 585 EVIVNGRIISHDEN 598


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 34  LYNEAVGVYSLKRSRLTAWMKF---KRVPIGHVYLCKIM 141
           L NEA+ +YS  ++ +  WM F   ++ PI H+   K +
Sbjct: 133 LNNEALKLYSCAKAGICRWMAFHFLEQEPIDHINFTKFL 171


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 330 ETFQRLRNKNLTTLNKIKYDSELLLHYL 247
           + ++    +NLT  N+++ D +  +HYL
Sbjct: 146 DVYEFFGGENLTLFNQVRVDCQCYIHYL 173


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = -3

Query: 781 AQINSEDENVLDFIIEDEYYLKKR--GVGAHIIKVASSPQLRLLYKNAYSAVSCGNYSIL 608
           A +  +D   L F+ E + +  +    V  + +  +S   + LL+   +++++ G  ++ 
Sbjct: 582 AVVPHDDGINLSFMCESKVFDLESVDSVTCNYVLSSSKNPMNLLF-TLHNSITDGKLNVH 640

Query: 607 CNLVQNGEYDLNAIMFNCAEIKLN 536
           CN +  G Y L  I+F   +  L+
Sbjct: 641 CNDIIPGRYHLKTIVFKLKDSVLS 664


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -1

Query: 372 PTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKN 223
           P +L S+  K   TE   R  N  LT L     + E  + Y  DD  NKN
Sbjct: 517 PVVLYSLQSK--DTEVRSRALNLILTFLELRNENLEFSIIYGMDDNDNKN 564


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 724 YLKKRGVGAHIIKVASSPQLRLLYKNAYSAVSCGNYS 614
           Y    G+ A +++  S  +L L++   Y+A   GN S
Sbjct: 62  YCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVS 98


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 357 SISKKISTTETFQRLR-NKNLTTLNKIKYDSELLLHYLYDDQQNKNS 220
           S+   ++   T Q+ R NK     ++I +D  LLLH+L+++  N  S
Sbjct: 129 SLPSHVAEDRTAQQYRQNKYQLHFSRITFD--LLLHFLFENVSNGGS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,870
Number of Sequences: 5004
Number of extensions: 46391
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)