Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h08
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...   113   2e-26
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...   107   2e-24
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    31   0.15 
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    31   0.20 
Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical pr...    28   1.1  
L23646-5|ABD94102.1|  145|Caenorhabditis elegans Hypothetical pr...    26   4.4  
L23646-4|AAA28039.1|  152|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine re...    26   5.8  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score =  113 bits (272), Expect = 2e-26
 Identities = 48/87 (55%), Positives = 61/87 (70%)
 Frame = -3

Query: 274 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 95
           MTKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA CGYP AK R+Y+W  K+       
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYPDAKKRTYNWGAKSIRRRTTG 60

Query: 94  XXRMRHLKIVRRRFRNGFKEGKPTPPK 14
             R RHL+ V  RFRNGF+EG    P+
Sbjct: 61  TGRTRHLRDVNARFRNGFREGTTPKPR 87


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score =  107 bits (256), Expect = 2e-24
 Identities = 46/85 (54%), Positives = 58/85 (68%)
 Frame = -3

Query: 274 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 95
           MTKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA CGY  AK R+Y+W  K+       
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTG 60

Query: 94  XXRMRHLKIVRRRFRNGFKEGKPTP 20
             R RHL+ V  RFRNGF+   P P
Sbjct: 61  TGRTRHLRDVNARFRNGFRGTTPKP 85


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 256 SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 149
           ++ K    TH  C +CG+ + +    KC  CG P A
Sbjct: 93  TYNKNNFSTHHFCNKCGKVAQN--SKKCKHCGGPVA 126


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 256 SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 149
           ++ K    TH  C +CG+ + +    KC  CG P A
Sbjct: 165 TYNKNNFSTHHFCNKCGKVAQN--SKKCKYCGGPVA 198


>Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical
           protein C17H1.9 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -1

Query: 243 AEIRPIRYAEDVVDRH---ITFKNQNAPNVDILQQNYDP 136
           A+++ I+Y  D +++H   + F+NQ   +   L+ N DP
Sbjct: 230 ADLKKIKYTSDEIEKHKSKLEFRNQQLESSRTLEINADP 268


>L23646-5|ABD94102.1|  145|Caenorhabditis elegans Hypothetical
           protein F44E2.6b protein.
          Length = 145

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 298 FRIVK-SDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPA 152
           +R+ + S   T  T  F     K   +C  CG   ++      A CG+PA
Sbjct: 32  YRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 81


>L23646-4|AAA28039.1|  152|Caenorhabditis elegans Hypothetical
           protein F44E2.6 protein.
          Length = 152

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 298 FRIVK-SDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPA 152
           +R+ + S   T  T  F     K   +C  CG   ++      A CG+PA
Sbjct: 39  YRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 88


>AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein68 protein.
          Length = 299

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +1

Query: 163 HIGRILIFECDMTIYHIFCITYGSYFGAYRSLRY 264
           H G +++F  +++++  F I+   +F  +  L+Y
Sbjct: 77  HCGFVILFCYELSVFTHFAISINRFFAVWMPLKY 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,936,811
Number of Sequences: 27780
Number of extensions: 124620
Number of successful extensions: 286
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)