Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h04
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171...    31   0.94 
01_06_0808 + 32134765-32136570                                         29   3.8  
09_03_0027 - 11690348-11690828,11694815-11695749                       29   5.0  
08_01_0678 + 5878291-5878461,5879722-5879984,5881658-5881729,588...    28   8.8  

>02_01_0258 -
           1709672-1709752,1710277-1710460,1710627-1710841,
           1711321-1711390,1711525-1711607,1711720-1711884,
           1712068-1712172,1713021-1713140,1713620-1713718,
           1713790-1713885,1714367-1714480,1715265-1715372,
           1716200-1716264,1716430-1716609,1716747-1717397,
           1717497-1717565,1717639-1717858
          Length = 874

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -3

Query: 470 VKMFQKIIFPYQL-VPN-----VIIKLNNFDQIMSVAPNKAESYKKIRLFCKNDSIAIS 312
           V  F  IIF Y   +PN     VI+  N + +   VAP+ + S K I + CK+  I+++
Sbjct: 377 VGKFSSIIFEYASNIPNIAVEDVIVSFNRWHEQFEVAPSISASEKIISVCCKSSKISLA 435


>01_06_0808 + 32134765-32136570
          Length = 601

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 121 YETDGGRHYIKSDGRSHRQQYRRYHP 44
           Y T  GR+Y + DG  H ++Y +Y P
Sbjct: 558 YRTFTGRYYSRLDGTRHLERYIKYKP 583


>09_03_0027 - 11690348-11690828,11694815-11695749
          Length = 471

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
 Frame = +3

Query: 573 HVALHKPARSLPIQFVVQIINFLVRQIDYIA---RGLFAILKDAKNAFQRQYLHHGGRFQ 743
           H+A   P   LP+  +++ +  + R   Y+A   + + AI+ D + AF+   +H GG+  
Sbjct: 296 HIATLAP-HVLPVSELLRYVWRVARA--YVAGNPKAVAAIVPDFQRAFEHMCIHSGGKAV 352

Query: 744 IET**KVIAF 773
           I+   K++AF
Sbjct: 353 IDAVVKLMAF 362


>08_01_0678 +
           5878291-5878461,5879722-5879984,5881658-5881729,
           5881807-5881878,5882092-5882166,5882443-5882517,
           5883623-5883667,5883767-5883831,5883919-5884203,
           5884234-5884298,5884435-5884636,5884735-5884905,
           5885237-5885355,5886699-5886909,5887007-5887238,
           5887325-5887475,5887547-5887945
          Length = 890

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = -3

Query: 431 VPNVIIKLNNFDQIMSVAPNKAESYKKIRLFCKNDSIAISSNGIVPINMPDFSPSNNAFD 252
           +P+ I  L+N + ++ +  NK E      L     S  +  N  + +   + S    + D
Sbjct: 180 IPDYIGNLSNLE-VLKLQGNKIEGPIPASL-----SKLVKLNSSLTLRNCNISDKLTSVD 233

Query: 251 YSDYVNRTNINFVTQRVLIDGGFSS 177
           +S++ N T++N V    +ID   SS
Sbjct: 234 FSNFKNLTDLNLVWNNFMIDSSNSS 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,531,100
Number of Sequences: 37544
Number of extensions: 482525
Number of successful extensions: 1252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)