Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h04
         (901 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023387-1|AAY55803.2|  391|Drosophila melanogaster IP10444p pro...    31   2.8  
BT023327-1|AAY55743.1|  399|Drosophila melanogaster IP10544p pro...    31   2.8  
BT010245-1|AAQ23563.1|  297|Drosophila melanogaster RE40745p pro...    29   8.7  
AY119115-1|AAM50975.1|  715|Drosophila melanogaster RE15579p pro...    29   8.7  
AF212322-1|AAF24495.1|  601|Drosophila melanogaster SP71 protein.      29   8.7  
AE014298-2|ABC67158.1|  715|Drosophila melanogaster CG17131-PB, ...    29   8.7  
AE014298-1|AAZ52488.1|  715|Drosophila melanogaster CG17131-PA, ...    29   8.7  
AE013599-1388|AAF58589.1|  297|Drosophila melanogaster CG8357-PA...    29   8.7  

>BT023387-1|AAY55803.2|  391|Drosophila melanogaster IP10444p
           protein.
          Length = 391

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 302 IVPINMPDFSPSNNAFDYS--DYVNRTNINFVTQRVLIDGGFSSGVTVTPIKY 150
           IV +    F   +N  D S   Y++ TN +   Q    DG  SSG TV P  Y
Sbjct: 16  IVSVRAMSFDQPHNEHDASLASYLDNTNDDISPQGFNGDGNGSSGATVVPFPY 68


>BT023327-1|AAY55743.1|  399|Drosophila melanogaster IP10544p
           protein.
          Length = 399

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 302 IVPINMPDFSPSNNAFDYS--DYVNRTNINFVTQRVLIDGGFSSGVTVTPIKY 150
           IV +    F   +N  D S   Y++ TN +   Q    DG  SSG TV P  Y
Sbjct: 24  IVSVRAMSFDQPHNEHDASLASYLDNTNDDISPQGFNGDGNGSSGATVVPFPY 76


>BT010245-1|AAQ23563.1|  297|Drosophila melanogaster RE40745p
           protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 453 FLEHFDKVHNRLAIVGNAEQRLCLFNVFETGAVYCS 560
           F+E        L    NAE RL L  + + GA++CS
Sbjct: 169 FMEQLKDAGRPLCAKRNAEDRLNLLKLLKAGAIFCS 204


>AY119115-1|AAM50975.1|  715|Drosophila melanogaster RE15579p
           protein.
          Length = 715

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 326 CRF-CKT-AEFFCRTLLYLAQPTLSGQSCSI 412
           CR  C+  +EF CR+ LYL QP  S  +C +
Sbjct: 260 CRLACEIESEFLCRSFLYLGQPQGSQYNCRL 290


>AF212322-1|AAF24495.1|  601|Drosophila melanogaster SP71 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 326 CRF-CKT-AEFFCRTLLYLAQPTLSGQSCSI 412
           CR  C+  +EF CR+ LYL QP  S  +C +
Sbjct: 146 CRLACEIESEFLCRSFLYLGQPQGSQYNCRL 176


>AE014298-2|ABC67158.1|  715|Drosophila melanogaster CG17131-PB,
           isoform B protein.
          Length = 715

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 326 CRF-CKT-AEFFCRTLLYLAQPTLSGQSCSI 412
           CR  C+  +EF CR+ LYL QP  S  +C +
Sbjct: 260 CRLACEIESEFLCRSFLYLGQPQGSQYNCRL 290


>AE014298-1|AAZ52488.1|  715|Drosophila melanogaster CG17131-PA,
           isoform A protein.
          Length = 715

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 326 CRF-CKT-AEFFCRTLLYLAQPTLSGQSCSI 412
           CR  C+  +EF CR+ LYL QP  S  +C +
Sbjct: 260 CRLACEIESEFLCRSFLYLGQPQGSQYNCRL 290


>AE013599-1388|AAF58589.1|  297|Drosophila melanogaster CG8357-PA
           protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 453 FLEHFDKVHNRLAIVGNAEQRLCLFNVFETGAVYCS 560
           F+E        L    NAE RL L  + + GA++CS
Sbjct: 169 FMEQLKDAGRPLCAKRNAEDRLNLLKLLKAGAIFCS 204


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,498,157
Number of Sequences: 53049
Number of extensions: 843945
Number of successful extensions: 1958
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1958
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4382549442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)