Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12h04
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-21|CAD45606.2| 433|Caenorhabditis elegans Hypothetical... 30 2.0
AL032626-20|CAD45605.1| 445|Caenorhabditis elegans Hypothetical... 30 2.0
AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical... 30 2.0
AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid... 30 2.0
U29382-1|AAG00006.1| 382|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical p... 28 7.9
AF106573-1|AAC78152.2| 336|Caenorhabditis elegans Hypothetical ... 28 7.9
AC024836-1|AAK39347.2| 475|Caenorhabditis elegans Hypothetical ... 28 7.9
AC006769-11|AAF60586.1| 340|Caenorhabditis elegans Seven tm rec... 28 7.9
AC006645-4|AAF39845.2| 340|Caenorhabditis elegans Seven tm rece... 28 7.9
>AL032626-21|CAD45606.2| 433|Caenorhabditis elegans Hypothetical
protein Y37D8A.23c protein.
Length = 433
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 608 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 492
W R++ L D+P+ C + S IK A ++LGI DY
Sbjct: 108 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 147
>AL032626-20|CAD45605.1| 445|Caenorhabditis elegans Hypothetical
protein Y37D8A.23b protein.
Length = 445
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 608 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 492
W R++ L D+P+ C + S IK A ++LGI DY
Sbjct: 183 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 222
>AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical
protein Y37D8A.23a protein.
Length = 508
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 608 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 492
W R++ L D+P+ C + S IK A ++LGI DY
Sbjct: 183 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 222
>AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid
decarboxylase protein.
Length = 508
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 608 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 492
W R++ L D+P+ C + S IK A ++LGI DY
Sbjct: 183 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 222
>U29382-1|AAG00006.1| 382|Caenorhabditis elegans Hypothetical
protein R03H10.2 protein.
Length = 382
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 324 AVVFAKQPNFFVGLCFIWRNRHYLVKVVQFYD-YVGHQLIGENYFLEHFDKVHNRLAIVG 500
A+ A + V LC++W+++ +V F D + I E FL + L ++G
Sbjct: 49 ALALAVAISSLVLLCYVWKDKQVYDHIVDFLDKTIQISKIAERPFLGVYQLSEKELEVLG 108
Query: 501 N 503
N
Sbjct: 109 N 109
>Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical
protein R11D1.10a protein.
Length = 394
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 605 PNSICCTNYQFPRAAD*LHSARAVCDIERCKKCV 706
P+SICCTN + + + + C + CKKC+
Sbjct: 2 PSSICCTNCRTKYSLLNREAGCSNCALSFCKKCL 35
>AF106573-1|AAC78152.2| 336|Caenorhabditis elegans Hypothetical
protein F52D2.1 protein.
Length = 336
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -3
Query: 566 NCATVNRSSLKYIKQAQSLLGIPDYSQTVVDFVKMFQKIIFPYQLVPNVIIKLNNF 399
N V LK++ + S LGI +Y++ + +K F + P + P +++ NF
Sbjct: 122 NFMDVGFKDLKFLLKHVSTLGIYNYAKNRKEIIKSFIDFLKPEECFPVDAVEIWNF 177
>AC024836-1|AAK39347.2| 475|Caenorhabditis elegans Hypothetical
protein Y59E1A.1 protein.
Length = 475
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -3
Query: 566 NCATVNRSSLKYIKQAQSLLGIPDYSQTVVDFVKMFQKIIFPYQLVPNVIIKLNNF 399
N V LK++ + S LGI +Y++ + +K F + P + P +++ NF
Sbjct: 122 NFMDVGFKDLKFLLKHVSTLGIYNYAKNRKEIIKSFIDFLKPEECFPVDAVEIWNF 177
>AC006769-11|AAF60586.1| 340|Caenorhabditis elegans Seven tm
receptor protein 154 protein.
Length = 340
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = -3
Query: 464 MFQKIIFPYQLVPNVIIKLNNFDQIMSVAPNKAESYKKIRLFCKNDSIAISS 309
+ + I P V +V++ +++ +P K SYK + ++C SIA ++
Sbjct: 6 LIKSITQPIAAVLSVVVNFILITLVVTSSPRKMGSYKYLLIYCSGLSIAYAA 57
>AC006645-4|AAF39845.2| 340|Caenorhabditis elegans Seven tm
receptor protein 267 protein.
Length = 340
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = -3
Query: 464 MFQKIIFPYQLVPNVIIKLNNFDQIMSVAPNKAESYKKIRLFCKNDSIAISS 309
+ + I P V +V++ +++ +P K SYK + ++C SIA ++
Sbjct: 6 LIKSITQPIAAVLSVVVNFILITLVVTSSPRKMGSYKYLLIYCSGLSIAYAA 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,200,060
Number of Sequences: 27780
Number of extensions: 435139
Number of successful extensions: 1046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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