Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h01
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    41   2e-04
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    27   3.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   4.2  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    27   4.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   7.3  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    26   7.3  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   9.7  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   9.7  

>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = -2

Query: 651 SNEIFLIVAATIYYHEDNYEAALKILHNA-ESLELRAFTLQCLLAMNRPDLARKQLKLLQ 475
           S+ +   + A       +++ A+ +L  + E+LE  A  +   L  ++ + A + LK   
Sbjct: 94  SDSVVQTLGAIFQIKNGSFDDAMDLLKKSVENLEAVALQVYIHLREHKIEAAEQTLKQAL 153

Query: 474 DIEDDGTLTQLAQAWLNLIQGG-PGIQDAHYSVMELS 367
           D  D+  + QLAQ+W+ ++ GG     DA Y   EL+
Sbjct: 154 DWADEEIVLQLAQSWIKIVSGGVESYNDAFYVFEELN 190


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 591 AALKILHNAESLELRAFTLQCLL---AMNRPDLARKQLKLLQDIEDDGTL 451
           A +K+ H+ + L     T+  L    AM   DL +K  +LLQ I DDG +
Sbjct: 267 AQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 662 VRNCPMKYS*LWLQQFTIMKIIMKLH*KSFI 570
           +R CP      + QQ +I+ +I++ H +SF+
Sbjct: 857 MRTCPTNILEFYFQQLSILVLIVRQHIRSFL 887


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 156 DSHPQHPFVKEYKAKTDEFQRLAAQYQPSVAS*THGVYVI 37
           +++  HPF  E++    E   L +  QPS  S THGV ++
Sbjct: 242 NAYGTHPFYLEHRYTPSE--NLNSDGQPSYTSSTHGVLML 279


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -2

Query: 618 IYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQL 442
           ++++   Y+  L +  N  S++    T + LL  N   L+ K LKL ++I+D  TL QL
Sbjct: 381 VHWNSTVYQELLNLKSNNSSVD-GVKTRRQLLEENAL-LSHKVLKLTEEIQDLETLNQL 437


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
 Frame = -2

Query: 723 LLPDANKSA--IVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAALKILHNAESLEL 550
           L  DA K+A  IV  + ++   G +         +AT+Y+       A+ + H A +L +
Sbjct: 166 LQKDATKAADLIVKALLSKQFNGDDEQKSRLFEQSATLYFQAGTPSYAVPLYHEALNLTM 225

Query: 549 RAFTLQCLLAMNRPDLARKQLKLLQ--DIEDDGTLTQLAQAW 430
              +   L+ MN  +LA   L   +  D +   TL + +Q+W
Sbjct: 226 ANPSCHGLILMN--NLATSLLAQTETVDKKHHETLMKQSQSW 265


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 636 LIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCL 526
           LI+    Y H   Y + ++ILHN E  +L  F  +CL
Sbjct: 214 LIMKQFSYSHHMGYISEIRILHN-EYEKLLKFVRECL 249


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 150 HPQHPFVKEYKAKTDEFQRLAAQYQPSV 67
           H +HPF ++         R AA Y PS+
Sbjct: 318 HHRHPFARQPDYSAHSIPRTAAPYAPSM 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,432
Number of Sequences: 5004
Number of extensions: 55013
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)