Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12h01
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 117 1e-26
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 109 3e-24
03_06_0191 - 32228642-32228949,32229028-32230567 33 0.36
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 31 1.1
01_03_0196 - 13696056-13697448,13697676-13697713 30 1.9
01_03_0224 + 13940419-13941786 29 3.3
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 29 4.4
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 29 5.8
03_05_0095 - 20745639-20745785,20745880-20746065,20746286-207463... 29 5.8
09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929... 28 7.7
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 7.7
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 117 bits (282), Expect = 1e-26
Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 1/237 (0%)
Frame = -2
Query: 801 GXYRIVQQEL-KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVA 625
G Y++V E+ +A LQ +K L YL D +SAIV+ + ++ SN + ++A
Sbjct: 51 GSYQLVISEIDSSAATSLQAVKLLALYLSGD-KESAIVS-LKEWLSDSAVGSNPVLRLIA 108
Query: 624 ATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQ 445
I+ HE +Y ALK H+ +L+L A +Q + M+R D A KQLK++Q I++D TLTQ
Sbjct: 109 GIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQ 168
Query: 444 LAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDA 265
LA AWL++ GG I++A+ + +E G ++EAE L +A
Sbjct: 169 LANAWLDIAVGGSKIREAYLIFQDFAE-KYPMTGMVLNGKAVCCMHMGSFDEAETLLLEA 227
Query: 264 ASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 94
++ + GKP S+RYL+QL SHP H VK + D F+R
Sbjct: 228 LNKDAKDPETLANLIVCNLHLGKP---SSRYLSQLKLSHPDHVLVKRAVSAEDNFER 281
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 109 bits (261), Expect = 3e-24
Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 2/238 (0%)
Frame = -2
Query: 801 GXYRIVQQELKT-ADPMLQPLKSLVDYLLPDAN-KSAIVADIDARVAKGTELSNEIFLIV 628
G +++V E+ A LQ ++ L YL A K + + ++ +A SN I +V
Sbjct: 58 GSHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLV 117
Query: 627 AATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLT 448
A T+ HE +Y ALK ++ ++EL A +Q L M+R D A KQL+++Q +++D TLT
Sbjct: 118 AGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLT 177
Query: 447 QLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTD 268
QLA AW++L+ GG IQ+AH +LSE +E+AE L +
Sbjct: 178 QLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGN-FEDAEGLLLE 236
Query: 267 AASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 94
+ ++ + GK ++RYL QL +HP H VK + D F R
Sbjct: 237 SLNKDAKDAETLANLVVCSLNLGKS---ASRYLNQLKLAHPDHMLVKRMSSAEDSFDR 291
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = -2
Query: 771 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 592
K P + S+++ L + V V + TE+++ + + + + N++
Sbjct: 459 KGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALC-KQGNFK 517
Query: 591 AALKILH----NAESLELRAFTLQCLLAMNRPDLARKQLKLLQ 475
AL +L N ES+ L+CL+ + DLA + +K ++
Sbjct: 518 GALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIR 560
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -2
Query: 198 KPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 70
+P EV +L+ DS P+HP +K++ + + + A+ QPS
Sbjct: 19 EPEEVE--WLSSSSDSEPEHPALKQWTPSSPDSEEAEAEQQPS 59
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -2
Query: 612 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 484
YH + ++++K LH+ + L + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>01_03_0224 + 13940419-13941786
Length = 455
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 540 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 406
T +CL+ RP LAR L ++ D+ G ++ W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 166 GQVSGRHLRWFPEMRRGERKAEQQVGVLWGAGRCVCQLLFSLFPHTSGSCSPST 327
G R W PE R ER+ ++ G W R + Q + +L S CSPST
Sbjct: 100 GMAGTREGSWTPERRGEERRRRREEG-SWFLARSL-QSVGTLHVGFSSRCSPST 151
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = -2
Query: 783 QQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHE 604
Q+E++T D Q L DY +PD AI D+D ++ + + + + +V T +Y
Sbjct: 1317 QKEIQTGDTPHQELLDNRDYTIPDGAIVAI-RDLDQQMYVSIKNTGKKYQVV-GTYHYSL 1374
Query: 603 DNYEAALKILHN 568
+ A K+ H+
Sbjct: 1375 SSECALFKVKHH 1386
>03_05_0095 -
20745639-20745785,20745880-20746065,20746286-20746348,
20747255-20747331,20748692-20749121
Length = 300
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 26 T*VRITYTPCV*LATEGWYCAARRWNSSVLALYSFTKGCWGW 151
T +R+ PC +EG + AARR+ SS++ ++G GW
Sbjct: 128 TRLRLIVFPCSYACSEGTFIAARRYASSMVPTSIISQGI-GW 168
>09_06_0140 +
21090686-21091645,21092142-21092221,21092705-21092906,
21093052-21093327,21093414-21093482,21093638-21093785,
21094080-21094228,21094897-21095061,21095623-21095732,
21095868-21095946,21095947-21096240
Length = 843
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 242 PTCCSALRSPRRISGNHRR 186
PT C+ R PR G+HRR
Sbjct: 55 PTSCATARQPRHARGHHRR 73
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Frame = -1
Query: 136 LREGIQGQDGRVPTSGRAV-----PTLSG*LNAWCICNTNLCK 23
L EGI+GQ G VP + P L G N ICN L +
Sbjct: 266 LSEGIEGQGGHVPYRDSKLTRILQPALGGNANTAIICNITLAQ 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,638,376
Number of Sequences: 37544
Number of extensions: 407835
Number of successful extensions: 1236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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