Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12h01
(814 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456886-1|CAG33167.1| 308|Homo sapiens COPE protein. 191 2e-48
BC017285-1|AAH17285.1| 308|Homo sapiens coatomer protein comple... 191 2e-48
BC007250-1|AAH07250.1| 308|Homo sapiens coatomer protein comple... 191 2e-48
BC003155-1|AAH03155.1| 308|Homo sapiens coatomer protein comple... 191 2e-48
AJ249366-1|CAB55628.1| 308|Homo sapiens epsilon-COP protein pro... 191 2e-48
AF092438-1|AAP97213.1| 307|Homo sapiens epsilon-COP protein. 191 2e-48
AK222584-1|BAD96304.1| 308|Homo sapiens epsilon subunit of coat... 191 3e-48
AJ131182-1|CAA10316.1| 308|Homo sapiens Epsilon COP protein. 190 4e-48
AC005197-2|AAC24612.1| 245|Homo sapiens COPE_HUMAN protein. 189 9e-48
AC002985-1|AAB81543.1| 147|Homo sapiens epsilon-COP protein. 71 4e-12
BC126459-1|AAI26460.1| 257|Homo sapiens chromosome 10 open read... 30 8.7
AL121928-10|CAI12523.1| 257|Homo sapiens novel protein protein. 30 8.7
AK024342-1|BAB14892.1| 257|Homo sapiens protein ( Homo sapiens ... 30 8.7
>CR456886-1|CAG33167.1| 308|Homo sapiens COPE protein.
Length = 308
Score = 191 bits (466), Expect = 2e-48
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 1/248 (0%)
Frame = -2
Query: 810 LPQGXYRIVQQELKTAD-PMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFL 634
L Q + +V E+K + P LQ ++ DYL ++ + +IVA++D +++ +++N FL
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
Query: 633 IVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGT 454
++AA+IY H+ N +AAL+ LH +SLE A T+Q LL ++R DLARK+LK +QD+++D T
Sbjct: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
Query: 453 LTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQL 274
LTQLA AW++L GG +QDA+Y E+++ G WE AE L
Sbjct: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGLL 239
Query: 273 TDAASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 94
+A + GKPPEV+ RYL+QL D+H HPF+KEY+AK ++F R
Sbjct: 240 QEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 299
Query: 93 LAAQYQPS 70
L QY PS
Sbjct: 300 LVLQYAPS 307
>BC017285-1|AAH17285.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 191 bits (466), Expect = 2e-48
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 1/248 (0%)
Frame = -2
Query: 810 LPQGXYRIVQQELKTAD-PMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFL 634
L Q + +V E+K + P LQ ++ DYL ++ + +IVA++D +++ +++N FL
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
Query: 633 IVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGT 454
++AA+IY H+ N +AAL+ LH +SLE A T+Q LL ++R DLARK+LK +QD+++D T
Sbjct: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
Query: 453 LTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQL 274
LTQLA AW++L GG +QDA+Y E+++ G WE AE L
Sbjct: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGLL 239
Query: 273 TDAASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 94
+A + GKPPEV+ RYL+QL D+H HPF+KEY+AK ++F R
Sbjct: 240 QEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 299
Query: 93 LAAQYQPS 70
L QY PS
Sbjct: 300 LVLQYAPS 307
>BC007250-1|AAH07250.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 191 bits (466), Expect = 2e-48
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 1/248 (0%)
Frame = -2
Query: 810 LPQGXYRIVQQELKTAD-PMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFL 634
L Q + +V E+K + P LQ ++ DYL ++ + +IVA++D +++ +++N FL
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
Query: 633 IVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGT 454
++AA+IY H+ N +AAL+ LH +SLE A T+Q LL ++R DLARK+LK +QD+++D T
Sbjct: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
Query: 453 LTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQL 274
LTQLA AW++L GG +QDA+Y E+++ G WE AE L
Sbjct: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGLL 239
Query: 273 TDAASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 94
+A + GKPPEV+ RYL+QL D+H HPF+KEY+AK ++F R
Sbjct: 240 QEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 299
Query: 93 LAAQYQPS 70
L QY PS
Sbjct: 300 LVLQYAPS 307
>BC003155-1|AAH03155.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 191 bits (466), Expect = 2e-48
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 1/248 (0%)
Frame = -2
Query: 810 LPQGXYRIVQQELKTAD-PMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFL 634
L Q + +V E+K + P LQ ++ DYL ++ + +IVA++D +++ +++N FL
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
Query: 633 IVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGT 454
++AA+IY H+ N +AAL+ LH +SLE A T+Q LL ++R DLARK+LK +QD+++D T
Sbjct: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
Query: 453 LTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQL 274
LTQLA AW++L GG +QDA+Y E+++ G WE AE L
Sbjct: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGLL 239
Query: 273 TDAASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 94
+A + GKPPEV+ RYL+QL D+H HPF+KEY+AK ++F R
Sbjct: 240 QEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 299
Query: 93 LAAQYQPS 70
L QY PS
Sbjct: 300 LVLQYAPS 307
>AJ249366-1|CAB55628.1| 308|Homo sapiens epsilon-COP protein
protein.
Length = 308
Score = 191 bits (466), Expect = 2e-48
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 1/248 (0%)
Frame = -2
Query: 810 LPQGXYRIVQQELKTAD-PMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFL 634
L Q + +V E+K + P LQ ++ DYL ++ + +IVA++D +++ +++N FL
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
Query: 633 IVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGT 454
++AA+IY H+ N +AAL+ LH +SLE A T+Q LL ++R DLARK+LK +QD+++D T
Sbjct: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
Query: 453 LTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQL 274
LTQLA AW++L GG +QDA+Y E+++ G WE AE L
Sbjct: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGLL 239
Query: 273 TDAASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 94
+A + GKPPEV+ RYL+QL D+H HPF+KEY+AK ++F R
Sbjct: 240 QEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 299
Query: 93 LAAQYQPS 70
L QY PS
Sbjct: 300 LVLQYAPS 307
>AF092438-1|AAP97213.1| 307|Homo sapiens epsilon-COP protein.
Length = 307
Score = 191 bits (466), Expect = 2e-48
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 1/248 (0%)
Frame = -2
Query: 810 LPQGXYRIVQQELKTAD-PMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFL 634
L Q + +V E+K + P LQ ++ DYL ++ + +IVA++D +++ +++N FL
Sbjct: 60 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 119
Query: 633 IVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGT 454
++AA+IY H+ N +AAL+ LH +SLE A T+Q LL ++R DLARK+LK +QD+++D T
Sbjct: 120 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 179
Query: 453 LTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQL 274
LTQLA AW++L GG +QDA+Y E+++ G WE AE L
Sbjct: 180 LTQLATAWVSLATGGEKLQDAYYIFQEMAD-KCSPTLLLLNGQAACHIAQGRWEAAEGLL 238
Query: 273 TDAASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 94
+A + GKPPEV+ RYL+QL D+H HPF+KEY+AK ++F R
Sbjct: 239 QEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 298
Query: 93 LAAQYQPS 70
L QY PS
Sbjct: 299 LVLQYAPS 306
>AK222584-1|BAD96304.1| 308|Homo sapiens epsilon subunit of
coatomer protein complex isoform a variant protein.
Length = 308
Score = 191 bits (465), Expect = 3e-48
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 1/248 (0%)
Frame = -2
Query: 810 LPQGXYRIVQQELKTAD-PMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFL 634
L Q + +V E+K + P LQ ++ DYL ++ + +IVA++D +++ +++N FL
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
Query: 633 IVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGT 454
++AA+IY H+ N +AAL+ LH +SLE A T+Q LL ++R DLARK+LK +QD+++D T
Sbjct: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
Query: 453 LTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQL 274
LTQLA AW++L GG +QDA+Y E+++ G WE AE L
Sbjct: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGLL 239
Query: 273 TDAASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 94
+A + GKPPEV+ RYL+QL D+H HPF+KEY+AK ++F R
Sbjct: 240 QEALDKDSCYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 299
Query: 93 LAAQYQPS 70
L QY PS
Sbjct: 300 LVLQYAPS 307
>AJ131182-1|CAA10316.1| 308|Homo sapiens Epsilon COP protein.
Length = 308
Score = 190 bits (464), Expect = 4e-48
Identities = 99/248 (39%), Positives = 148/248 (59%), Gaps = 1/248 (0%)
Frame = -2
Query: 810 LPQGXYRIVQQELKTAD-PMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFL 634
L Q + +V E+K + P LQ ++ DYL ++ + +IVA++D +++ +++N FL
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNITFL 120
Query: 633 IVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGT 454
++AA+IY H+ N +AAL+ LH +SLE A T+Q LL ++R DLARK+LK +QD+++D T
Sbjct: 121 LMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDAT 180
Query: 453 LTQLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQL 274
LTQLA AW++L GG +QDA+Y E+++ G WE AE L
Sbjct: 181 LTQLATAWVSLATGGEKLQDAYYIFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGLL 239
Query: 273 TDAASRAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 94
+A + GKPPEV+ RYL+QL D+H HPF+KEY+AK ++F R
Sbjct: 240 QEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 299
Query: 93 LAAQYQPS 70
L QY PS
Sbjct: 300 LVLQYAPS 307
>AC005197-2|AAC24612.1| 245|Homo sapiens COPE_HUMAN protein.
Length = 245
Score = 189 bits (461), Expect = 9e-48
Identities = 97/243 (39%), Positives = 146/243 (60%), Gaps = 1/243 (0%)
Frame = -2
Query: 795 YRIVQQELKTAD-PMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAAT 619
+ +V E+K + P LQ ++ DYL ++ + +IVA++D +++ +++N FL++AA+
Sbjct: 3 FGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAAS 62
Query: 618 IYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLA 439
IY H+ N +AAL+ LH +SLE A T+Q LL ++R DLARK+LK +QD+++D TLTQLA
Sbjct: 63 IYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLA 122
Query: 438 QAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAAS 259
AW++L GG +QDA+Y E+++ G WE AE L +A
Sbjct: 123 TAWVSLATGGEKLQDAYYIFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALD 181
Query: 258 RAPQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQY 79
+ GKPPEV+ RYL+QL D+H HPF+KEY+AK ++F RL QY
Sbjct: 182 KDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQY 241
Query: 78 QPS 70
PS
Sbjct: 242 APS 244
>AC002985-1|AAB81543.1| 147|Homo sapiens epsilon-COP protein.
Length = 147
Score = 71.3 bits (167), Expect = 4e-12
Identities = 32/87 (36%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = -2
Query: 810 LPQGXYRIVQQELKTAD-PMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFL 634
L Q + +V E+K + P LQ ++ DYL ++ + +IVA++D +++ +++N FL
Sbjct: 61 LAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFL 120
Query: 633 IVAATIYYHEDNYEAALKILHNAESLE 553
++AA+IY H+ N +AAL+ LH +SLE
Sbjct: 121 LMAASIYLHDQNPDAALRALHQGDSLE 147
>BC126459-1|AAI26460.1| 257|Homo sapiens chromosome 10 open reading
frame 95 protein.
Length = 257
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 242 PTCCSALRSPRRISGNHRR-CRP-DTWP 165
P C+A R P R SG RR C P TWP
Sbjct: 46 PCMCTAGRRPNRASGRRRRSCSPAPTWP 73
>AL121928-10|CAI12523.1| 257|Homo sapiens novel protein protein.
Length = 257
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 242 PTCCSALRSPRRISGNHRR-CRP-DTWP 165
P C+A R P R SG RR C P TWP
Sbjct: 46 PCMCTAGRRPNRASGRRRRSCSPAPTWP 73
>AK024342-1|BAB14892.1| 257|Homo sapiens protein ( Homo sapiens
cDNA FLJ14280 fis, clone PLACE1005584, weakly similar to
TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0. ).
Length = 257
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 242 PTCCSALRSPRRISGNHRR-CRP-DTWP 165
P C+A R P R SG RR C P TWP
Sbjct: 46 PCMCTAGRRPNRASGRRRRSCSPAPTWP 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,560,684
Number of Sequences: 237096
Number of extensions: 2202720
Number of successful extensions: 8845
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8835
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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