Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12h01
(814 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF145691-1|AAD38666.1| 306|Drosophila melanogaster BcDNA.LD2988... 115 7e-26
AE014134-1103|AAF52392.1| 306|Drosophila melanogaster CG9543-PA... 115 7e-26
L42511-1|AAC41607.1| 224|Drosophila melanogaster shortsighted c... 31 1.4
AF003342-1|AAB61239.1| 225|Drosophila melanogaster bunched prot... 31 1.4
AE014134-2215|AAF53200.2| 219|Drosophila melanogaster CG5461-PB... 31 1.4
AY094852-1|AAM11205.1| 638|Drosophila melanogaster RE12569p pro... 29 7.6
AE013599-2714|AAF57677.1| 638|Drosophila melanogaster CG10924-P... 29 7.6
>AF145691-1|AAD38666.1| 306|Drosophila melanogaster BcDNA.LD29885
protein.
Length = 306
Score = 115 bits (277), Expect = 7e-26
Identities = 76/239 (31%), Positives = 114/239 (47%), Gaps = 1/239 (0%)
Frame = -2
Query: 792 RIVQQELKTADPM-LQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATI 616
RIV ++K + LQ L+ + + + ++ + +VA G E I+ + A +
Sbjct: 59 RIVASDIKEGNSTPLQALRLVHEAFEQPSRTEELLEKLTDKVA-GEEDETNIWHLATAIV 117
Query: 615 YYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQ 436
Y H+ +E ALKILH + +LE A ++QCLL + R DLA++ + +Q+I DD TLTQLAQ
Sbjct: 118 YCHDGQFENALKILHGSTNLESMALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQ 177
Query: 435 AWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASR 256
AW+ L QG +QDA + E E +EEA+ L ++ +
Sbjct: 178 AWVALAQGTEQMQDAFHIYQEFCE-KFKPTPALLNGQAVVHLGLERYEEADSVLRESLLK 236
Query: 255 APQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQY 79
GKP E R L QL +P+ FV + K+ EF RL QY
Sbjct: 237 KHNDYDTLINLMVHAHLTGKPTEAITRNLEQLRQFYPKSDFVTDLDKKSAEFDRLCLQY 295
>AE014134-1103|AAF52392.1| 306|Drosophila melanogaster CG9543-PA
protein.
Length = 306
Score = 115 bits (277), Expect = 7e-26
Identities = 76/239 (31%), Positives = 114/239 (47%), Gaps = 1/239 (0%)
Frame = -2
Query: 792 RIVQQELKTADPM-LQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATI 616
RIV ++K + LQ L+ + + + ++ + +VA G E I+ + A +
Sbjct: 59 RIVASDIKEGNSTPLQALRLVHEAFEQPSRTEELLEKLTDKVA-GEEDETNIWHLATAIV 117
Query: 615 YYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQ 436
Y H+ +E ALKILH + +LE A ++QCLL + R DLA++ + +Q+I DD TLTQLAQ
Sbjct: 118 YCHDGQFENALKILHGSTNLESMALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQ 177
Query: 435 AWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASR 256
AW+ L QG +QDA + E E +EEA+ L ++ +
Sbjct: 178 AWVALAQGTEQMQDAFHIYQEFCE-KFKPTPALLNGQAVVHLGLERYEEADSVLRESLLK 236
Query: 255 APQXXXXXXXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQY 79
GKP E R L QL +P+ FV + K+ EF RL QY
Sbjct: 237 KHNDYDTLINLMVHAHLTGKPTEAITRNLEQLRQFYPKSDFVTDLDKKSAEFDRLCLQY 295
>L42511-1|AAC41607.1| 224|Drosophila melanogaster shortsighted
class 1 protein.
Length = 224
Score = 31.5 bits (68), Expect = 1.4
Identities = 27/97 (27%), Positives = 45/97 (46%)
Frame = -2
Query: 771 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 592
K DP+ + + +DY LPDA+ ++ VA ID ++ + +L +I A E E
Sbjct: 28 KQQDPVREVVMKYIDYFLPDASGTSAVA-IDNKIEQAMDLVKSHLMI--AVREEVEVLKE 84
Query: 591 AALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKL 481
+++ LEL +L N P +QL+L
Sbjct: 85 RISELMDKINKLELE----NSILKSNIPQETLQQLQL 117
>AF003342-1|AAB61239.1| 225|Drosophila melanogaster bunched
protein.
Length = 225
Score = 31.5 bits (68), Expect = 1.4
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -2
Query: 771 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLI 631
K DP+ + + +DY LPDA+ ++ VA ID ++ + +L +I
Sbjct: 29 KQEDPVCEVVMKYIDYFLPDASGTSAVA-IDNKIEQAMDLVKSHLMI 74
>AE014134-2215|AAF53200.2| 219|Drosophila melanogaster CG5461-PB,
isoform B protein.
Length = 219
Score = 31.5 bits (68), Expect = 1.4
Identities = 27/97 (27%), Positives = 45/97 (46%)
Frame = -2
Query: 771 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 592
K DP+ + + +DY LPDA+ ++ VA ID ++ + +L +I A E E
Sbjct: 28 KQQDPVREVVMKYIDYFLPDASGTSAVA-IDNKIEQAMDLVKSHLMI--AVREEVEVLKE 84
Query: 591 AALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKL 481
+++ LEL +L N P +QL+L
Sbjct: 85 RISELMDKINKLELE----NSILKSNIPQETLQQLQL 117
>AY094852-1|AAM11205.1| 638|Drosophila melanogaster RE12569p
protein.
Length = 638
Score = 29.1 bits (62), Expect = 7.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 75 VGTARPDVGTRPSWPCIPSR 134
VGT + V PSWPC P R
Sbjct: 215 VGTPKSGVQAMPSWPCDPER 234
>AE013599-2714|AAF57677.1| 638|Drosophila melanogaster CG10924-PA
protein.
Length = 638
Score = 29.1 bits (62), Expect = 7.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 75 VGTARPDVGTRPSWPCIPSR 134
VGT + V PSWPC P R
Sbjct: 215 VGTPKSGVQAMPSWPCDPER 234
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,884,675
Number of Sequences: 53049
Number of extensions: 671246
Number of successful extensions: 2141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2141
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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