Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12h01
(814 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical pr... 85 6e-17
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 33 0.18
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 33 0.18
Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical pr... 31 1.3
AL021175-2|CAA15966.1| 322|Caenorhabditis elegans Hypothetical ... 28 6.9
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 28 9.1
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 28 9.1
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 28 9.1
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 28 9.1
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 28 9.1
>Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical
protein F45G2.4 protein.
Length = 292
Score = 85.0 bits (201), Expect = 6e-17
Identities = 62/229 (27%), Positives = 103/229 (44%)
Frame = -2
Query: 771 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 592
K+AD L ++ ++ A K I+A++ VA + +EI ++AATI D +
Sbjct: 64 KSAD--LAAVRRYAEFRNNPAAKKKILAEVQEEVAS-RNIKSEIAAVLAATILNEADLSQ 120
Query: 591 AALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQG 412
A + + E LE RA + L+ MN+ LA ++K + I++D TL+QLA A +
Sbjct: 121 DAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGA 180
Query: 411 GPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXGMWEEAEQQLTDAASRAPQXXXXX 232
++DA Y E+S+ + AE+ L A R +
Sbjct: 181 SGKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILTQD-YAAAEELLESALERDNKDADVL 239
Query: 231 XXXXXXXXXXGKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAA 85
K +V R+++QL HP HP+V ++ K EF R+A+
Sbjct: 240 INSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVIDFNEKEAEFDRVAS 288
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 198 KPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSV 67
K ++ A +A +D PQ F K +KAK DE +RL Q + +
Sbjct: 96 KEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQI 139
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 198 KPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSV 67
K ++ A +A +D PQ F K +KAK DE +RL Q + +
Sbjct: 96 KEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQI 139
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 198 KPPEVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPSV 67
K ++ A +A +D PQ F K +KAK DE +RL Q + +
Sbjct: 99 KEEDIKAGNIADHIDDLPQEVFDKLHKAKFDEIERLRKQIEEQI 142
>Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical
protein C07E3.8 protein.
Length = 294
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 606 EDNYEAALKILHNAESLELRAFTLQCLLAMNR 511
E +E + H+ ESLE+ +FT+ CLL NR
Sbjct: 117 EGVFETPFEKPHHFESLEITSFTIDCLLYGNR 148
>AL021175-2|CAA15966.1| 322|Caenorhabditis elegans Hypothetical
protein Y6E2A.2 protein.
Length = 322
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 168 AQLLDSHPQHPFVKEYKAKTDEFQRLAAQY 79
+QL D H F+K Y K D+F +AQY
Sbjct: 158 SQLKDLHVYPEFLKSYCLKPDDFAYASAQY 187
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -2
Query: 657 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 493
E +NE+F ++A+ I Y DN+ A++ ++L + Q L + + +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -2
Query: 657 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 493
E +NE+F ++A+ I Y DN+ A++ ++L + Q L + + +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = -2
Query: 774 LKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHE 604
++T P L ++D + + +KS +AD+D + + + A +Y +E
Sbjct: 378 VQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDALAHLYLYE 429
Query: 603 DNYEAALKILHNAESLEL 550
YE+ALKIL + + ++
Sbjct: 430 RKYESALKILMSCQDFQI 447
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = -2
Query: 774 LKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHE 604
++T P L ++D + + +KS +AD+D + + + A +Y +E
Sbjct: 378 VQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDALAHLYLYE 429
Query: 603 DNYEAALKILHNAESLEL 550
YE+ALKIL + + ++
Sbjct: 430 RKYESALKILMSCQDFQI 447
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = -2
Query: 774 LKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHE 604
++T P L ++D + + +KS +AD+D + + + A +Y +E
Sbjct: 426 VQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDALAHLYLYE 477
Query: 603 DNYEAALKILHNAESLEL 550
YE+ALKIL + + ++
Sbjct: 478 RKYESALKILMSCQDFQI 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,684,287
Number of Sequences: 27780
Number of extensions: 319358
Number of successful extensions: 950
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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