Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12g21
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    69   2e-13
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    69   2e-13
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    26   2.0  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   3.4  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   4.5  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    24   6.0  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    24   6.0  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 68.9 bits (161), Expect = 2e-13
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = -3

Query: 278 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRD 144
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR+
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVRE 51


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 68.9 bits (161), Expect = 2e-13
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = -3

Query: 278 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRD 144
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR+
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVRE 51


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 156 SFHVPDDLTAGLPNELDLHLSTLALRTSTAEYFHDTSKNVGFI 284
           S H+P   ++ + N L  + +++++R  T  Y+H   K +  I
Sbjct: 57  SIHMPAPFSSVVRNALKANPNSVSIRDITTHYYHFAEKMLHLI 99


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -3

Query: 314 VLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 180
           +   I  A +D+P  + ++V+ +  T  +  CT+VK+    + ++
Sbjct: 114 IQEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 179 DGWSPQ*TRPSLEYTGPENQYGRVLSRHEQ 268
           D  S +   P L  T PE + GRVLS  EQ
Sbjct: 503 DADSSEPASPVLMPTKPEKKKGRVLSETEQ 532


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 251 LSRHEQERWVYPFWLVISSLIQLTHVHQSWRVSK 352
           +S+    RWVYPF +  S+L+  T  +Q  ++ K
Sbjct: 283 ISKDVLSRWVYPF-VPDSNLLNQTFSYQRHQIYK 315


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 223 WP*EPVRPSTFTTRARTLGLSILACNIE 306
           WP +P    +       +G+SI+AC IE
Sbjct: 498 WPGDPTFRKSNDVCIALIGVSIIACGIE 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,142
Number of Sequences: 5004
Number of extensions: 23180
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)