Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12g18
(848 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D31765-1|BAA06543.1| 903|Homo sapiens KIAA0061 protein. 126 1e-28
BC011529-1|AAH11529.1| 1024|Homo sapiens processing of precursor... 124 5e-28
CR457089-1|CAG33370.1| 541|Homo sapiens UBCE7IP5 protein. 31 7.0
BX537422-1|CAD97664.1| 1203|Homo sapiens hypothetical protein pr... 31 7.0
BC150296-1|AAI50297.1| 1032|Homo sapiens PCDH9 protein protein. 31 7.0
BC000515-1|AAH00515.1| 541|Homo sapiens U-box domain containing... 31 7.0
AL603863-3|CAM17491.1| 1237|Homo sapiens protocadherin 9 protein. 31 7.0
AL603863-2|CAH72759.1| 1203|Homo sapiens protocadherin 9 protein. 31 7.0
AL603863-1|CAH72758.1| 1032|Homo sapiens protocadherin 9 protein. 31 7.0
AL355173-2|CAM17290.1| 1237|Homo sapiens protocadherin 9 protein. 31 7.0
AL355173-1|CAH72612.1| 1203|Homo sapiens protocadherin 9 protein. 31 7.0
AL138814-1|CAM13066.1| 1237|Homo sapiens protocadherin 9 protein. 31 7.0
AL136999-2|CAM13771.1| 1237|Homo sapiens protocadherin 9 protein. 31 7.0
AL136999-1|CAI12502.1| 1203|Homo sapiens protocadherin 9 protein. 31 7.0
AL121891-2|CAC09909.1| 541|Homo sapiens U-box domain containing... 31 7.0
AK222876-1|BAD96596.1| 541|Homo sapiens ubiquitin conjugating e... 31 7.0
AF169692-1|AAF89689.2| 1203|Homo sapiens protocadherin-9 protein. 31 7.0
AB020667-1|BAA74883.2| 551|Homo sapiens KIAA0860 protein protein. 31 7.0
>D31765-1|BAA06543.1| 903|Homo sapiens KIAA0061 protein.
Length = 903
Score = 126 bits (303), Expect = 1e-28
Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 19/257 (7%)
Frame = -1
Query: 716 NRFRLTGPNSHAVLTHSLKCVESAKIKNDD-------W---AKSYDDLNLEEKDE-YWES 570
NRFRL GP SH++LT ++K + D W K D ++L + E +E
Sbjct: 309 NRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCKKPDSVSLHCRQEAIFEL 368
Query: 569 LSTLNSPSQLPPKIIIGLIVKDPRLSRPSKRTKAIIETDTSFDSN-----IVLNIPSYAS 405
L + SP+++P I+GL V DPR++ P K++KA+ + D+ ++ +P +
Sbjct: 369 LGGITSPAEIPAGTILGLTVGDPRINLPQKKSKALPNPEKCQDNEKVRQLLLEGVPVECT 428
Query: 404 SSPLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRPGSQDS 225
S +W+ +I + + + +S+ + + + +VPG P IPI+LIQ+PG
Sbjct: 429 HSFIWNQDICKSVTENKISDQD-LNRMRSELLVPGSQLILGPHESKIPILLIQQPGKVTG 487
Query: 224 DYKKIGYGSGWDIIVPAGYGLPFWLTFIMFGGRSGGLRETENLAFEMGECYFP---PDSA 54
+ ++G+GSGWD+++P G+G+ FW+ FI G R GGL+E+ + P PD
Sbjct: 488 E-DRLGWGSGWDVLLPKGWGMAFWIPFIYRGVRVGGLKESAVHSQYKRSPNVPGDFPDCP 546
Query: 53 AGKLEEKRIENELKEKY 3
AG L + L EKY
Sbjct: 547 AGMLFAEEQAKNLLEKY 563
>BC011529-1|AAH11529.1| 1024|Homo sapiens processing of precursor 1,
ribonuclease P/MRP subunit (S. cerevisiae) protein.
Length = 1024
Score = 124 bits (298), Expect = 5e-28
Identities = 80/257 (31%), Positives = 133/257 (51%), Gaps = 19/257 (7%)
Frame = -1
Query: 716 NRFRLTGPNSHAVLTHSLKCVESAKIKNDD-------W---AKSYDDLNLEEKDE-YWES 570
NRFRL GP SH++LT ++K + D W K D ++L + E +E
Sbjct: 430 NRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCKKPDSVSLHCRQEAIFEL 489
Query: 569 LSTLNSPSQLPPKIIIGLIVKDPRLSRPSKRTKAIIETDTSFDSN-----IVLNIPSYAS 405
L + SP+++P I+GL V DPR++ P K++ A+ + D+ ++ +P +
Sbjct: 490 LGGITSPAEIPAGTILGLTVGDPRINLPQKKSNALPNPEKCQDNEKVRQLLLEGVPVECT 549
Query: 404 SSPLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRPGSQDS 225
S +W+ +I + + + +S+ + + + +VPG P IPI+LIQ+PG
Sbjct: 550 HSFIWNQDICKSVTENKISDQD-LNRMRSELLVPGSQLILGPHESKIPILLIQQPGKVTG 608
Query: 224 DYKKIGYGSGWDIIVPAGYGLPFWLTFIMFGGRSGGLRETENLAFEMGECYFP---PDSA 54
+ ++G+GSGWD+++P G+G+ FW+ FI G R GGL+E+ + P PD
Sbjct: 609 E-DRLGWGSGWDVLLPKGWGMAFWIPFIYRGVRVGGLKESAVHSQYKRSPNVPGDFPDCP 667
Query: 53 AGKLEEKRIENELKEKY 3
AG L + L EKY
Sbjct: 668 AGMLFAEEQAKNLLEKY 684
>CR457089-1|CAG33370.1| 541|Homo sapiens UBCE7IP5 protein.
Length = 541
Score = 30.7 bits (66), Expect = 7.0
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = -1
Query: 488 PSKRTKAIIETDTSFDSNIVLNIPSYASSSPLWDLNIHEKLKKKIMSNGEFIQHLTKTKI 309
PS++ K I + + DSN +N ++++SPL E KK+ + E LT
Sbjct: 360 PSQKRK-IEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNE--PSLTHMDC 416
Query: 308 VPGDINENDPVLQSIPIILIQRPGSQDS 225
G ++ + QS+ I L GS S
Sbjct: 417 STGPLSHEQKLSQSLEIALASTLGSMPS 444
>BX537422-1|CAD97664.1| 1203|Homo sapiens hypothetical protein
protein.
Length = 1203
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>BC150296-1|AAI50297.1| 1032|Homo sapiens PCDH9 protein protein.
Length = 1032
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>BC000515-1|AAH00515.1| 541|Homo sapiens U-box domain containing 5
protein.
Length = 541
Score = 30.7 bits (66), Expect = 7.0
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = -1
Query: 488 PSKRTKAIIETDTSFDSNIVLNIPSYASSSPLWDLNIHEKLKKKIMSNGEFIQHLTKTKI 309
PS++ K I + + DSN +N ++++SPL E KK+ + E LT
Sbjct: 360 PSQKRK-IEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNE--PSLTHMDC 416
Query: 308 VPGDINENDPVLQSIPIILIQRPGSQDS 225
G ++ + QS+ I L GS S
Sbjct: 417 STGPLSHEQKLSQSLEIALASTLGSMPS 444
>AL603863-3|CAM17491.1| 1237|Homo sapiens protocadherin 9 protein.
Length = 1237
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>AL603863-2|CAH72759.1| 1203|Homo sapiens protocadherin 9 protein.
Length = 1203
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>AL603863-1|CAH72758.1| 1032|Homo sapiens protocadherin 9 protein.
Length = 1032
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>AL355173-2|CAM17290.1| 1237|Homo sapiens protocadherin 9 protein.
Length = 1237
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>AL355173-1|CAH72612.1| 1203|Homo sapiens protocadherin 9 protein.
Length = 1203
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>AL138814-1|CAM13066.1| 1237|Homo sapiens protocadherin 9 protein.
Length = 1237
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>AL136999-2|CAM13771.1| 1237|Homo sapiens protocadherin 9 protein.
Length = 1237
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>AL136999-1|CAI12502.1| 1203|Homo sapiens protocadherin 9 protein.
Length = 1203
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>AL121891-2|CAC09909.1| 541|Homo sapiens U-box domain containing 5
protein.
Length = 541
Score = 30.7 bits (66), Expect = 7.0
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = -1
Query: 488 PSKRTKAIIETDTSFDSNIVLNIPSYASSSPLWDLNIHEKLKKKIMSNGEFIQHLTKTKI 309
PS++ K I + + DSN +N ++++SPL E KK+ + E LT
Sbjct: 360 PSQKRK-IEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNE--PSLTHMDC 416
Query: 308 VPGDINENDPVLQSIPIILIQRPGSQDS 225
G ++ + QS+ I L GS S
Sbjct: 417 STGPLSHEQKLSQSLEIALASTLGSMPS 444
>AK222876-1|BAD96596.1| 541|Homo sapiens ubiquitin conjugating
enzyme 7 interacting protein 5 isoform a variant
protein.
Length = 541
Score = 30.7 bits (66), Expect = 7.0
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = -1
Query: 488 PSKRTKAIIETDTSFDSNIVLNIPSYASSSPLWDLNIHEKLKKKIMSNGEFIQHLTKTKI 309
PS++ K I + + DSN +N ++++SPL E KK+ + E LT
Sbjct: 360 PSQKRK-IEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNE--PSLTHMDC 416
Query: 308 VPGDINENDPVLQSIPIILIQRPGSQDS 225
G ++ + QS+ I L GS S
Sbjct: 417 STGPLSHEQKLSQSLEIALASTLGSMPS 444
>AF169692-1|AAF89689.2| 1203|Homo sapiens protocadherin-9 protein.
Length = 1203
Score = 30.7 bits (66), Expect = 7.0
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 572 SLSTLNSPSQLPPKIIIGLIVK--DPRLSRPSKRTKAIIETDTSFDSNIVLNIPSYASSS 399
++S +N+ + ++ L+ K D L + S T I T D + SYA +
Sbjct: 48 NISHINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEEN 107
Query: 398 PLWDLNIHEKLKKKIMSNGEFIQHLTKTKIVPGDINENDPVLQSIPIILIQRP 240
+ +L+ I+ N F L K KI+ D N+N P+ S P+I I P
Sbjct: 108 ECFF-----ELEVVILPNDFF--RLIKIKIIVKDTNDNAPMFPS-PVINISIP 152
>AB020667-1|BAA74883.2| 551|Homo sapiens KIAA0860 protein protein.
Length = 551
Score = 30.7 bits (66), Expect = 7.0
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = -1
Query: 488 PSKRTKAIIETDTSFDSNIVLNIPSYASSSPLWDLNIHEKLKKKIMSNGEFIQHLTKTKI 309
PS++ K I + + DSN +N ++++SPL E KK+ + E LT
Sbjct: 370 PSQKRK-IEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNE--PSLTHMDC 426
Query: 308 VPGDINENDPVLQSIPIILIQRPGSQDS 225
G ++ + QS+ I L GS S
Sbjct: 427 STGPLSHEQKLSQSLEIALASTLGSMPS 454
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,121,347
Number of Sequences: 237096
Number of extensions: 2482936
Number of successful extensions: 5545
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5538
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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