Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12g16
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   0.84 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   2.6  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    25   2.6  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   3.4  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   4.5  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    24   4.5  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    24   5.9  
SPAC24C9.16c |cox8||cytochrome c oxidase subunit VIII|Schizosacc...    24   5.9  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    23   7.9  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     23   7.9  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 189 ENLPFDIHNRYKLTLYFILYAGSGLSAPYL 100
           E   F+++N Y LTL+ I++      AP++
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAPFI 501


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 154 LVTVVNVEG*ILARNTAVRMVSHEIRYHISAQFV 255
           L+T  NV   +L R+  V ++  E  YHI  Q +
Sbjct: 233 LITGANVNTYLLERSRVVSLLKGERNYHIFYQLI 266


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 14  YXFFTSLNLKQAKDLCSL 67
           Y +FTS N KQA++L S+
Sbjct: 470 YTYFTSDNAKQARELVSI 487


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 291 NVKMITPLTRISNKLGRN 238
           NVK +TP  RI N LG N
Sbjct: 134 NVKKLTPKARILNLLGYN 151


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 162 RYKLTLYFILYAGSGLS 112
           RY+LTLY +LY  S +S
Sbjct: 525 RYRLTLYIMLYTLSQIS 541


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 237 VVTNFVRNHSNGGIPGENLPF 175
           +    +RN ++ G P ENLPF
Sbjct: 204 IALQMIRNINDLGTPDENLPF 224


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 32  LNLKQAKDLCSLNYFFKSW 88
           L L+  +DLC  N F K+W
Sbjct: 337 LTLEGTRDLCIRNLFRKTW 355


>SPAC24C9.16c |cox8||cytochrome c oxidase subunit
           VIII|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 66

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 195 PGENLPFDIHNRYKLTLYFILYAGSGLSAPYLITRH 88
           PG  +PF I+ +   TL +    G   S P+++ ++
Sbjct: 26  PGSTIPFYINKKPLPTLLYFGTFGVIFSIPFIVVKY 61


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 209 EWFLTKFVTTFLPNLFEMR 265
           +WF TK  +  LP++F++R
Sbjct: 16  KWFNTKLSSRDLPSVFDLR 34


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 215 FLTKFVTTFLPNLFEMRVNGVIIFT 289
           F   F+T  +PN+ E  +   I++T
Sbjct: 288 FAKNFITNVVPNILETYIQQTILWT 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,238,076
Number of Sequences: 5004
Number of extensions: 23553
Number of successful extensions: 72
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)