Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12g16
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.21 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.21 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   1.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 188  SPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTF 292
            +PGIPP   FL+   TT +  L     NG  I  F
Sbjct: 1498 APGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYF 1532


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 188  SPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTF 292
            +PGIPP   FL+   TT +  L     NG  I  F
Sbjct: 1494 APGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYF 1528


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 179 GRFSPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTF 292
           GRF P     E FLT     +L +  E+R+    IFTF
Sbjct: 186 GRFVP-----EGFLTSCSFDYLTDTNEIRIFVATIFTF 218


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 225 FVRNHSNGGIPGENLPFDIHNRYKLTLYFIL 133
           FV NH       + L +    RYK+ + F+L
Sbjct: 304 FVDNHDTQRDNPQILTYKYSKRYKMAVAFML 334


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 300  NRRNVKMITPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPFD 172
            N +     + + +  NK+G   ++   R H+  G+P E  P D
Sbjct: 1046 NLKTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVP-EQPPHD 1087


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 213 GFSRNSLPHF 242
           GF + +LPHF
Sbjct: 262 GFRKRTLPHF 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,556
Number of Sequences: 438
Number of extensions: 1639
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)