Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12g12
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    58   1e-09
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    56   7e-09
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    44   4e-05
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    29   0.65 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   8.1  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 31/86 (36%), Positives = 48/86 (55%)
 Frame = -2

Query: 618 DHFVAQLYKFMDDRGTPLNRNPTIANKDIDLYRLFRVVQKLGGYNRVTNQNQWKTIADKM 439
           D F+  L  FM+ RGTP+   P I N  I+L  L+ +V + GG  +V+  N W  I+  +
Sbjct: 192 DKFMVSLISFMEKRGTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNFWPKISASL 251

Query: 438 GFHPVTNSITNLCKQAYKKFLHSFED 361
           GF P  ++I +L  Q Y  +L  +E+
Sbjct: 252 GF-PSPDAI-SLLIQYYNSYLLPYEE 275


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
 Frame = -2

Query: 624 EKDHFVAQLYKFMDDRGTPLNRNPTIANKDIDLYRLFRVVQKLGGYNRVT-NQNQWKTIA 448
           E D F++ +  F  +RG P++ NP I  K I LY L++ V K GGY+ V+  ++ W  IA
Sbjct: 22  ENDSFLSLIESFSQERGVPIDINPKIGRKPILLYELYKKVIKRGGYDAVSATEDGWTNIA 81

Query: 447 DKMGFHPVTNSITNLCKQAYKKFLHSFE 364
           ++        S   + +  Y K+L S+E
Sbjct: 82  EEFNQSDPARS-AGILQNVYFKYLISWE 108


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = -2

Query: 603 QLYKFMDDRGTPLNRNPTIANKDIDLYRLFRVVQKLGGYN-RVTNQNQWKTIADKMGFHP 427
           ++Y+F  + G  L  +  I+N  IDLY L R +      + +    + WK I  ++   P
Sbjct: 134 RVYRFFCNLGMELPESFFISNTSIDLYSLMRCIDSHASLSEKELKVHVWKRILRELSI-P 192

Query: 426 VTNSITNLCKQAYKKFLHSFEDFYRK 349
            TN+        Y +++  FEDF RK
Sbjct: 193 FTNASLKEASDLYLRYIFPFEDFVRK 218


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 21/135 (15%), Positives = 53/135 (39%)
 Frame = -2

Query: 798 KKEAREFRKGSAPLEWAGVEAALQYLNQGVLPPHWDRDTLFNEPRNTXXXXXXDEPREEK 619
           +K + +++  +     A   A  ++L+   + P W  +    E  +        +P   K
Sbjct: 177 QKRSNDYQHENYDTYEAAERAFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRK 236

Query: 618 DHFVAQLYKFMDDRGTPLNRNPTIANKDIDLYRLFRVVQKLGGYNRVTNQNQWKTIADKM 439
             F A +  ++ D+        T   K+         ++ L   +++ +   W+T+ ++ 
Sbjct: 237 CAFDAYILNYLTDQSDAEKNRVTKIRKEF--------IEMLKSSDKIHSYTLWRTVKNEF 288

Query: 438 GFHPVTNSITNLCKQ 394
             HP  N+ ++  +Q
Sbjct: 289 SSHPAFNATSSETEQ 303


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -2

Query: 573  TPLNRNPTIANKDIDLYRLFRVVQKLGGYNRVTNQNQWKTIADKMGFHPVTNSITNL 403
            TPL+   T+ N  ID+Y  F+         +VT  N    +A      P  +S+ N+
Sbjct: 1238 TPLDLPETLENTQIDIYPSFKTESTDDQLEKVTQTN----VASNKRVAPYADSMANV 1290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,894
Number of Sequences: 5004
Number of extensions: 65063
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)