Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12g09
(356 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 28 0.49
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 3.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 3.5
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 4.6
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 4.6
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 4.6
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 4.6
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 24 6.1
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 24 8.0
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 24 8.0
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 24 8.0
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 27.9 bits (59), Expect = 0.49
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 193 ERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 98
ERG T PK K+ K I A + +TTA+
Sbjct: 17 ERGFTNSPKTHPKMSSLKSFIKAVRASKTTAE 48
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 3.5
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 131 DSFLVLLQLFRLFWGFCYAALS*RHGMAAAFFCRRF 238
+ L + LF LFWG C A + + +F + +
Sbjct: 446 NGLLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTY 481
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 3.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 354 GGGNFNEADRQKLDLVHTLVNDIKNILTGTLTTK 253
GGG F ++ + L+H L+ ++L T K
Sbjct: 729 GGGRFESLYKEVMPLLHALLEAFNSLLISARTPK 762
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 24.6 bits (51), Expect = 4.6
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 75 PWFCKEETSAVVRSVCSAAIAFLYCCNFSDFFGGFVTPRSRNVMAWPPLFFVGVLSDM 248
P K +++V +S+ +F+ FS F G PR V PP+ VL D+
Sbjct: 286 PEISKSVSTSVEQSIAEYLPSFIKEAAFSTFTLGSKAPRIDRVRTHPPVERDVVLMDV 343
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 24.6 bits (51), Expect = 4.6
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 2 SFLFIF*Y-YNHIL*SFQLLKNGTLPVVLQRRNICCGAQRLLGSDSFLVL 148
S LF+F YN+I+ S+Q L L R G L+G ++ L
Sbjct: 452 SLLFVFFVSYNYIIDSYQKLAASALAAATLVRYAASGGMSLVGRPMYVNL 501
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 4.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 329 TDKNWTSCTLWLTIS 285
T KNW + T WLT S
Sbjct: 322 TSKNWEAYTAWLTSS 336
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 24.6 bits (51), Expect = 4.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 132 IAFLYCCNFSDFFGGFVTPRSRNVMAWPPLFFVGVLS 242
+ F CC +S F+ V RN+ F GVLS
Sbjct: 493 LVFEMCCGWSPFYAPDVQQMYRNIAFGKVRFPKGVLS 529
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 24.2 bits (50), Expect = 6.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 345 NFNEADRQKLDLVHTLVNDIKNILTGTLTTK*ACPTK 235
NF EA R K ++VH+L N+ K +L T PT+
Sbjct: 584 NF-EAPRYKTNIVHSLNNEQKYVLEVKNGTSEKNPTR 619
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 244 TCLFCCQRSREYIFDIVNQSVH 309
T LF C S+ Y+ +VNQ V+
Sbjct: 388 TELFFCSDSKYYVRHLVNQQVY 409
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 23.8 bits (49), Expect = 8.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -2
Query: 151 QQYKKAIAAEQTLRTTADVSSLQNHGESA 65
Q A+ EQ D LQN GESA
Sbjct: 117 QDVTDAVPEEQDFTEFEDEQELQNQGESA 145
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 8.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 351 GGNFNEADRQKLDLVHTLVNDIKNILTGTLTTK*ACPTK 235
GG R+ DLVHT+ ++++ G TTK A K
Sbjct: 97 GGGMPRGPRKGKDLVHTIKVTLEDLYRGK-TTKLALQKK 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,608
Number of Sequences: 5004
Number of extensions: 28475
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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