Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12g09
(356 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13... 31 0.20
11_06_0598 - 25391923-25393197 30 0.47
04_03_0070 + 10677677-10679989 28 1.9
09_06_0002 + 20121846-20123308,20123420-20123426 28 2.5
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 27 4.3
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 27 5.7
03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805 27 5.7
01_06_0133 - 26793335-26793380,26793696-26793907,26794009-267941... 27 5.7
06_01_0202 - 1554303-1554526,1554733-1554778 26 7.6
02_04_0192 + 20795659-20796309 26 7.6
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 26 7.6
>12_01_0019 -
135627-135983,136564-136797,137118-137196,137268-137383,
137847-137991,138177-138594,138644-138649,139315-139945
Length = 661
Score = 31.5 bits (68), Expect = 0.20
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 13 HFLILQPHSLIFPTLEKRHSPRGSAKKKHLLWCAAF 120
HFL P S F L +H P+ + HLL C AF
Sbjct: 32 HFLHRSPPSPCFLLLRTQHKPKPPQPQLHLLLCTAF 67
>11_06_0598 - 25391923-25393197
Length = 424
Score = 30.3 bits (65), Expect = 0.47
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -2
Query: 205 MTLRERGVTKPPKKSEKLQQYKKAIAAEQT 116
++LR +GVT+ PKK EKL QY + + QT
Sbjct: 95 LSLRNKGVTQLPKKIEKL-QYLETLDIRQT 123
>04_03_0070 + 10677677-10679989
Length = 770
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 31 PHSLIFPTLEKRHSPRGSAKKKHLLWCAAFA 123
P S I P+ ++RHS G +K+H L AA+A
Sbjct: 133 PISSIPPSSQRRHSTGGGGRKRHAL-AAAYA 162
>09_06_0002 + 20121846-20123308,20123420-20123426
Length = 489
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 341 LTKPTDKNWTSCTLWLTISKIYSRE 267
L P+ + T+C+LW+T S I+ +E
Sbjct: 238 LAHPSPSSSTNCSLWMTKSAIFPKE 262
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 262 DNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAE 122
D K ++ K A L+ + + PKKSEK +Q KKA+ E
Sbjct: 112 DQKAKEKEEKRLKAKAKEAARLQAQAASDGPKKSEK-KQRKKAVEDE 157
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 350 VAILTKPTDKNWTSCTLWLTISKI 279
VA + K D+NW LWL+I+ +
Sbjct: 693 VAYMQKKFDRNWKKWYLWLSIAVV 716
>03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805
Length = 517
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 32 HIL*SFQLLKNGTLPVVLQRRNICCGAQRLLGSDSFLV 145
H+ SF L N LP+ L N G ++LGS+ ++
Sbjct: 104 HVSKSFTLQLNYMLPLNLHNSNSSNGCMQVLGSNKLMI 141
>01_06_0133 -
26793335-26793380,26793696-26793907,26794009-26794134,
26794258-26794335,26794857-26795014,26795230-26795278,
26795369-26795414,26795527-26795654,26796154-26796237,
26796317-26796409,26796505-26796549,26796792-26796851
Length = 374
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 265 VDNKISMSDKTPTKKSGGH 209
V+N +SM DKT T +S GH
Sbjct: 316 VENFLSMIDKTGTPRSSGH 334
>06_01_0202 - 1554303-1554526,1554733-1554778
Length = 89
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -2
Query: 262 DNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAA 125
D+K SD P + G T PK SE +K +AA
Sbjct: 16 DHKSERSDSAPNPNPNPNPKLAVTTGATPTPKSSEPAGMSRKEVAA 61
>02_04_0192 + 20795659-20796309
Length = 216
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 284 LISLTKVCTRSSFCLSASLKLPPP 355
++SL + C R + C +A K PPP
Sbjct: 189 VLSLYRSCKRVAACFAAKAKPPPP 212
>01_03_0278 -
14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 226 LSAFCRTCL-FCCQRSREYIFDIVNQSVHEVQFLSVGFVKIA 348
L ++ + C FC ++Y+ D+ N H ++ SV +K++
Sbjct: 434 LPSYMKQCFAFCAMFPKDYVIDVDNLIHHLAKYSSVRALKLS 475
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,354,315
Number of Sequences: 37544
Number of extensions: 199318
Number of successful extensions: 626
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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