Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12g09
         (356 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.         29   4.2  
AK021873-1|BAB13925.1|  150|Homo sapiens protein ( Homo sapiens ...    28   7.4  
AJ253102-1|CAB76550.1|  107|Homo sapiens immunoglobulin heavy ch...    28   7.4  
AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.     28   7.4  

>AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.
          Length = 1943

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 287 SKIYSRER*QQNKHVRQNADKKKRR 213
           SK+YSR R Q+ +  RQ  ++K+RR
Sbjct: 717 SKVYSRPRKQEGQRRRQEQEEKRRR 741


>AK021873-1|BAB13925.1|  150|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11811 fis, clone HEMBA1006349. ).
          Length = 150

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 205 WHGRRFFLSAFCRTCLFCCQRS 270
           W G +  +  +CR+CLFC  R+
Sbjct: 101 WPGMQEHVKDYCRSCLFCIPRN 122


>AJ253102-1|CAB76550.1|  107|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 107

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 87  KEETSAVVRSVCSAAIAFLYCCNFSDFFGGFVTPRS 194
           K++ S  V SV +A  A  YC    + FGG+ +  S
Sbjct: 66  KQQFSLTVSSVTAADTAVYYCARVGNGFGGYCSSTS 101


>AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.
          Length = 1819

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 205  WHGRRFFLSAFCRTCLFCCQRS 270
            W G +  +  +CR+CLFC  R+
Sbjct: 1493 WPGMQEHVKDYCRSCLFCIPRN 1514


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,398,049
Number of Sequences: 237096
Number of extensions: 1043143
Number of successful extensions: 2579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2579
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2133208582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)