Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12g09
(356 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81058-11|CAH60760.1| 201|Caenorhabditis elegans Hypothetical p... 31 0.24
AF039048-11|AAB94232.1| 421|Caenorhabditis elegans Hypothetical... 31 0.31
AC024201-3|AAK93866.1| 238|Caenorhabditis elegans Dnaj domain (... 29 0.72
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr... 29 1.3
L25598-1|AAA27942.1| 129|Caenorhabditis elegans Hypothetical pr... 29 1.3
AF038608-10|AAC25814.2| 327|Caenorhabditis elegans Serpentine r... 27 2.9
AL034488-13|CAA22460.2| 345|Caenorhabditis elegans Hypothetical... 27 3.9
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 27 5.1
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 27 5.1
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 27 5.1
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 26 6.7
>Z81058-11|CAH60760.1| 201|Caenorhabditis elegans Hypothetical
protein F11E6.11 protein.
Length = 201
Score = 31.1 bits (67), Expect = 0.24
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 153 NFSDFFGGFVTPRSRNVMAWPPLFFVGVLSDMLILLSTFP*VYF 284
+FS FF G + P ++ WP VLS +++LLS F +Y+
Sbjct: 144 SFSVFFNGSIMPDCSYLVIWPTF----VLSFLILLLSIFVIIYY 183
>AF039048-11|AAB94232.1| 421|Caenorhabditis elegans Hypothetical
protein F16B4.1 protein.
Length = 421
Score = 30.7 bits (66), Expect = 0.31
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 134 YRCRANAAHHSRCFFFAEPRGECRFSR 54
+ CRA AA RC F E R CR S+
Sbjct: 49 FSCRACAAFFRRCHFLKENRRRCRLSK 75
>AC024201-3|AAK93866.1| 238|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 30 protein.
Length = 238
Score = 29.5 bits (63), Expect = 0.72
Identities = 11/42 (26%), Positives = 28/42 (66%)
Frame = -1
Query: 302 LWLTISKIYSRER*QQNKHVRQNADKKKRRPCHDVTRARRNK 177
LW+T++K+++ +R ++ K + + A+++KRR + +A +
Sbjct: 146 LWITVTKVFA-DREKKRKMLEERANEEKRRSTEALVQAAEKR 186
>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
protein T16G12.5 protein.
Length = 1142
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 244 TCLFCCQRSREYIFDIVNQSVHEVQFLSVGFV 339
TCLF C YI DI+ ++ V LS+G++
Sbjct: 574 TCLFACVEQIPYIKDILKSALDSV--LSIGYI 603
>L25598-1|AAA27942.1| 129|Caenorhabditis elegans Hypothetical
protein C06G4.4 protein.
Length = 129
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 184 VTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGESAV 62
+++ PK+SEK YKKA+A ++ ++ + G+ V
Sbjct: 1 MSEAPKRSEKSADYKKAVAKQRRIKKLRKMKIKDRAGDVVV 41
>AF038608-10|AAC25814.2| 327|Caenorhabditis elegans Serpentine
receptor, class z protein78 protein.
Length = 327
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 239 VGHAYFVVNVPVSIFLISLTKVC 307
V H Y +VN+ S+F++ +T +C
Sbjct: 62 VNHFYHMVNISYSLFVLLITVIC 84
>AL034488-13|CAA22460.2| 345|Caenorhabditis elegans Hypothetical
protein Y54G11A.12 protein.
Length = 345
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 189 RSRNVMAWPPLFFVGVLSDMLILL 260
R RNV+ WPP +G ++ LI L
Sbjct: 97 RERNVILWPPFAVLGGMAACLITL 120
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/82 (25%), Positives = 32/82 (39%)
Frame = -2
Query: 301 FG*RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAE 122
FG + V ++ S + PT K GG ++ + + ++Q E
Sbjct: 164 FGGDGNSWVRRPVGSRYSPKYQCPTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYE 223
Query: 121 QTLRTTADVSSLQNHGESAVFQ 56
L TT +LQN G VFQ
Sbjct: 224 NILETTMRPWALQNVGRGFVFQ 245
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/82 (25%), Positives = 32/82 (39%)
Frame = -2
Query: 301 FG*RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAE 122
FG + V ++ S + PT K GG ++ + + ++Q E
Sbjct: 94 FGSDGNSWVRRPVGSRYSPKYQCPTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYE 153
Query: 121 QTLRTTADVSSLQNHGESAVFQ 56
L TT +LQN G VFQ
Sbjct: 154 NILETTMRPWALQNVGRGFVFQ 175
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/82 (25%), Positives = 32/82 (39%)
Frame = -2
Query: 301 FG*RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAE 122
FG + V ++ S + PT K GG ++ + + ++Q E
Sbjct: 94 FGSDGNSWVRRPVGSRYSPKYQCPTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYE 153
Query: 121 QTLRTTADVSSLQNHGESAVFQ 56
L TT +LQN G VFQ
Sbjct: 154 NILETTMRPWALQNVGRGFVFQ 175
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 26.2 bits (55), Expect = 6.7
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 265 VDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSL 86
V ++ S + PT K GG ++ + + ++Q E L TT +L
Sbjct: 147 VGSRYSPKYQCPTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILETTMRPWAL 206
Query: 85 QNHGESAVFQ 56
QN G VFQ
Sbjct: 207 QNVGRGFVFQ 216
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,701,661
Number of Sequences: 27780
Number of extensions: 174125
Number of successful extensions: 655
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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