Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12g01
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451...    31   1.5  
04_01_0102 + 1060539-1060657,1060752-1060904,1061478-1061728,106...    30   2.0  
02_01_0642 - 4803464-4805665,4806231-4806320                           30   2.0  
11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788     29   4.5  
10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738...    29   6.0  
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249...    28   7.9  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    28   7.9  

>03_01_0614 +
           4515515-4515540,4515988-4516209,4516681-4516768,
           4517084-4517123,4517259-4517305,4517464-4517584,
           4517931-4518091
          Length = 234

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 26/102 (25%), Positives = 43/102 (42%)
 Frame = -2

Query: 515 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 336
           G+I  L  K     + L +  E    F N+L          N + +E R+ET QLA    
Sbjct: 74  GIIARLKDKSVDELQRLLKDKEAYNAFFNSLDQVKT----QNNLRDELRKETVQLARENL 129

Query: 335 DIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRS 210
           +  Q ++   N   ++ +  + A   ++ A L  QK  + RS
Sbjct: 130 EKEQRILELRNQCTIIRTTELAA-AQDRLAELERQKDEIMRS 170


>04_01_0102 +
           1060539-1060657,1060752-1060904,1061478-1061728,
           1061959-1062141,1062248-1062395,1062679-1062850,
           1062971-1063105,1063210-1063356
          Length = 435

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
 Frame = -2

Query: 221 LNRSIKRLGSSDVVFSSDYVPN--AMNVLNKVKETLPRNQYKAKHNK--ITLLQNL---T 63
           ++ ++  +G     FS   +P+  A++V++ V   L R+Q+KA H +   T+  NL    
Sbjct: 248 ISDNVPSIGKFITDFSESELPSVPALSVISHVMRGLQRSQFKANHAEWVNTVKPNLGPGL 307

Query: 62  REQLIDAVQSSMTET 18
           RE++++A+ S   E+
Sbjct: 308 RERILEAIASGDNES 322


>02_01_0642 - 4803464-4805665,4806231-4806320
          Length = 763

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -2

Query: 533 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQ 354
           K+++    ++E + +L+     LAE N +++     L +    LVQ  T L +  +    
Sbjct: 475 KVESIQIAVQEKDSELSETQRRLAEVNSEVVELKQLLDSKEDQLVQVRTELQDKEQHIQT 534

Query: 353 LANRM 339
           L N++
Sbjct: 535 LQNKL 539


>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
          Length = 1130

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
 Frame = -2

Query: 305  NNPQLLHSLAVCALGGEKYAFL---RAQKRSLNRSIKRLGSSDVVFSSDYVPNAMNVLNK 135
            N  + LH+L + ++      FL   RA +  + +  + L S DV+  SD++P+ +  L  
Sbjct: 997  NAMKSLHTLHIDSVATHMDPFLLGLRALRILIIKDSEELNSLDVLLESDHLPDTLEQLQL 1056

Query: 134  VK----ETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTE 21
            +     ++LP N  +    +   L N    Q +  + +++TE
Sbjct: 1057 INCNSIKSLPWNMDRVLVLESLQLINCPNMQFLPCLPNNLTE 1098


>10_06_0083 +
           10471648-10471806,10473261-10473343,10473384-10473810,
           10475806-10475932,10476329-10476471,10476687-10476749,
           10476833-10476898,10477047-10477085
          Length = 368

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -2

Query: 233 QKRSLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQ 54
           Q +S +RS+     S   FSS    +    L+K++ T     ++  H  +    N +REQ
Sbjct: 287 QTKSFSRSMSCDSHSKASFSSSSRAHTKVDLSKLEMTALWRYWR--HFNLDASPNPSREQ 344

Query: 53  LIDAVQ 36
           L+DAVQ
Sbjct: 345 LVDAVQ 350


>11_01_0334 +
           2495275-2495433,2495553-2495661,2496311-2496378,
           2496476-2496577,2496853-2497003,2497173-2497222,
           2497432-2497557,2497761-2497863,2498104-2498204,
           2498540-2498677,2498768-2498911,2499028-2499103,
           2499224-2499309,2499432-2499560,2500572-2500674,
           2500776-2500843,2500912-2501013,2501432-2501527,
           2501723-2501848,2502152-2502254,2502427-2502569,
           2503017-2503154,2503248-2503391,2503535-2503610,
           2503883-2503968,2504135-2504212,2505180-2505254,
           2505362-2505496,2506240-2506272,2507886-2507905,
           2508570-2508666,2508899-2509000,2510612-2510725
          Length = 1126

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 60  SSQVLQQRDLVVLGFVLVSRQRFFN-FVKHVHGVGHIVAAKYHVGRTQAFNATVKTALLR 236
           + +V++Q D V L   ++S +  FN F+K    V  + +    VG     N      +  
Sbjct: 366 AQEVMRQEDAVELQKKIMSAKFDFNDFLKQSQNVAKMGSMSRVVGMIPGMNKVTPAQIRE 425

Query: 237 AQKRILF 257
           A+KR+ F
Sbjct: 426 AEKRLAF 432


>02_01_0369 +
           2649178-2655291,2655773-2656601,2656737-2657425,
           2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
 Frame = -2

Query: 503 ELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADIAQ 324
           EL   L F  E+  E  E+  H  +      + L      L   + E    +NR AD+  
Sbjct: 502 ELTATLTFEKEARKEVEEQREHLCSENKRVLSNLSDLELSLASLKEEMNDGSNRCADLEC 561

Query: 323 DV-IAKPNNPQLLHSLAVCALGGEKY----AFLRAQKRSLNRSIKRLGSSDVVFSSDYVP 159
           ++   K N  + L  LA C    E        L A       +IK+L   ++  S++   
Sbjct: 562 ELRSTKENMERTLVELASCRNSLETLQNDNLELSANSSFEKEAIKKLEEDNLCLSNEKQG 621

Query: 158 NAMNVLNKVKETLPRNQYKAKH 93
             ++ L++ KE L  +  K +H
Sbjct: 622 LLLD-LSETKEELHLSYAKHEH 642


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,371,386
Number of Sequences: 37544
Number of extensions: 509146
Number of successful extensions: 1503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)