Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12f19
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 125 2e-30
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 121 3e-29
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 1.4
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 26 1.8
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 24 7.2
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 7.2
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 24 7.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 24 9.6
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 24 9.6
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 125 bits (302), Expect = 2e-30
Identities = 60/102 (58%), Positives = 74/102 (72%)
Frame = -2
Query: 357 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 178
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK IPRCG L+GI RP
Sbjct: 1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 177 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 52
E +RL + KKTV+R YGG L VK RIVRAFLIEEQKIVK
Sbjct: 61 EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 121 bits (292), Expect = 3e-29
Identities = 58/102 (56%), Positives = 73/102 (71%)
Frame = -2
Query: 357 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 178
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK IPRCG L+GI RP
Sbjct: 1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 177 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 52
E +RL + +K V+R YGG L VK RIVRAFLIEEQKIVK
Sbjct: 61 EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 336 RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 229
RR + N KS+++R PG L + KPK R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 336 RRRLSYNTKSN-QRRIVRTPGGRLVY 262
R+ SY T + +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 85 SDNALLDAFMAEDTTIDTFH 144
SDNA +D ++ED TI+ H
Sbjct: 83 SDNAAIDTDISEDETINQRH 102
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -2
Query: 231 RCGQCKSKLRGIQPARPAERSR 166
RC +CK +G RP R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 14 FADLVLACCALRTFTIFCSSIKKALTMRCLTHLWQRT 124
F D VLA C + F C +I + HL+ T
Sbjct: 297 FFDAVLAYCLSQLFNWSCQNISSYQRLVSFAHLYSYT 333
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.8 bits (49), Expect = 9.6
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Frame = -2
Query: 261 QYVKKPKKIPRCGQCKSKLRG-------IQPARPAERSR---LCYRKKTVKRVYG 127
Q + K KK P C C SK I+ + P ++S+ LC R V R YG
Sbjct: 659 QKILKLKKTPICRWCHSKRSSEWFVAPPIEESSPKDKSKIVALCQRCGYVWRYYG 713
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 23.8 bits (49), Expect = 9.6
Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = -3
Query: 287 GHRVAAWFISMSKSPR--RSQG 228
GHR+ A+F++++ P RS+G
Sbjct: 522 GHRIPAYFVNLADEPSQDRSEG 543
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,808
Number of Sequences: 5004
Number of extensions: 28408
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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