Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12f18
(883 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY957503-1|AAY41942.1| 596|Anopheles gambiae vasa-like protein ... 143 5e-36
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein. 38 5e-04
AY176048-1|AAO19579.1| 521|Anopheles gambiae cytochrome P450 CY... 29 0.25
AY735443-1|AAU08018.1| 163|Anopheles gambiae bursicon protein. 25 2.3
AY735442-1|AAU08017.1| 163|Anopheles gambiae bursicon protein. 25 2.3
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 25 4.0
AY705397-1|AAU12506.1| 555|Anopheles gambiae nicotinic acetylch... 23 9.3
AY705396-1|AAU12505.1| 710|Anopheles gambiae nicotinic acetylch... 23 9.3
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 23 9.3
>AY957503-1|AAY41942.1| 596|Anopheles gambiae vasa-like protein
protein.
Length = 596
Score = 143 bits (347), Expect = 5e-36
Identities = 83/220 (37%), Positives = 125/220 (56%), Gaps = 4/220 (1%)
Frame = -1
Query: 883 GRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRY--LPPATQ--VVLISAT 716
GR+ D I R + ++ +VLDEAD ML+ GF I V + +P Q ++ SAT
Sbjct: 308 GRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATMPEKQQRQTLMFSAT 367
Query: 715 LPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA 536
P EI E+ KF+ + I + V ++Q VE+ + K L ++ +
Sbjct: 368 FPAEIQELAGKFLHNYICVFVGIVGGACADVEQTIHLVEKFK-KRKKLEEILNGGNPKGT 426
Query: 535 VIFCNTKRKVDWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARG 356
++F TKR D+L M E F +S+HGD Q+ER+ + +F+SG+ VLI T V ARG
Sbjct: 427 LVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGRMDVLIATSVAARG 486
Query: 355 IDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 236
+D++ V+ V+NYDLP + + Y+HRIGR+GR G KG A +F
Sbjct: 487 LDIKNVNHVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSF 526
>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
Length = 2259
Score = 37.5 bits (83), Expect = 5e-04
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -1
Query: 436 KERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 272
++++ ++K FR + +LI T V GI++ + +LVI ++ P N Y GR+
Sbjct: 598 RKQEEVLKRFRMHECNLLIGTSVLEEGIELPKCNLVIRWNSPANYRSYAQCKGRA 652
>AY176048-1|AAO19579.1| 521|Anopheles gambiae cytochrome P450
CYP12F4 protein.
Length = 521
Score = 28.7 bits (61), Expect = 0.25
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 322 YDLPNN-RELYIHRIGRSGRFGRKGVAINFVKSDDIRILR 206
YD+ RELY + +G FGR+ + + FV D ++LR
Sbjct: 71 YDINKRLRELYGPILRMNGSFGREDLVMTFVPEDFEKVLR 110
>AY735443-1|AAU08018.1| 163|Anopheles gambiae bursicon protein.
Length = 163
Score = 25.4 bits (53), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 479 LLHLLCEPVNLPLCITKYYCLGNCQCIIEVT 571
++H+L P +P I + C+G C I+V+
Sbjct: 44 VIHVLQYPGCVPKPIPSFACIGRCASYIQVS 74
>AY735442-1|AAU08017.1| 163|Anopheles gambiae bursicon protein.
Length = 163
Score = 25.4 bits (53), Expect = 2.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 479 LLHLLCEPVNLPLCITKYYCLGNCQCIIEVT 571
++H+L P +P I + C+G C I+V+
Sbjct: 44 VIHVLQYPGCVPKPIPSFACIGRCASYIQVS 74
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 494 CEPVNLPLCITKYYCLGNCQCIIEVT 571
C+ L +CI K YC+ +C VT
Sbjct: 803 CKRNGLTICIEKCYCVSFSRCRSPVT 828
>AY705397-1|AAU12506.1| 555|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 4 protein.
Length = 555
Score = 23.4 bits (48), Expect = 9.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 215 PDVI*FNEVDGDTLTTESTRST 280
PD++ +N DG+ T +T++T
Sbjct: 112 PDIVLYNNADGNFEVTLATKAT 133
>AY705396-1|AAU12505.1| 710|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 3 protein.
Length = 710
Score = 23.4 bits (48), Expect = 9.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 215 PDVI*FNEVDGDTLTTESTRST 280
PD++ +N DG+ T +T++T
Sbjct: 108 PDIVLYNNADGNFEVTLATKAT 129
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 23.4 bits (48), Expect = 9.3
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 775 IYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKR-DELTLEG 626
IYDV ++ PP + ++ AT + E M I R D L L+G
Sbjct: 606 IYDVLKFSPPEIEPAVLFATNNALVCETPDDAMKVAYEIDRSRYDALALDG 656
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 924,825
Number of Sequences: 2352
Number of extensions: 19903
Number of successful extensions: 49
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 94680279
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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