Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12f18
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      143   2e-36
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               26   0.53 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    25   1.2  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    24   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  143 bits (346), Expect = 2e-36
 Identities = 80/234 (34%), Positives = 135/234 (57%), Gaps = 8/234 (3%)
 Frame = -1

Query: 883  GRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFK---EQIYDVYRYLPPAT-QVVLISAT 716
            GR+ D + +  ++  S++ LVLDEAD ML+ GF    E++ D    +P    Q ++ SAT
Sbjct: 332  GRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSAT 391

Query: 715  LPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY----DTLT 548
             P E+  +  +F+ + + + V         ++Q F  V R + K D L ++     D+ T
Sbjct: 392  FPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKK-DLLKEILERENDSGT 450

Query: 547  ITQAVIFCNTKRKVDWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRSGQSRVLITTDV 368
            +   ++F   K+K D++   + E N+  +S+HGD  Q++R+  + +F+SG+  +L+ T V
Sbjct: 451  LGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAV 510

Query: 367  WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILR 206
             ARG+D++ VS VINYDLP   + Y+HRIGR+GR G +G A +F   ++   LR
Sbjct: 511  AARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLR 564


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 362 CPDVSCNENTALTRTKFLHNVVSLFLWHVTMH 457
           C D + NE+  LT  KF   V+    +H+T +
Sbjct: 101 CVDNAKNEDKCLTAQKFSRCVIDYVKFHITQY 132


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 479 LLHLLCEPVNLPLCITKYYCLGNCQCIIEVT 571
           ++H L  P  +P  I  Y C G C   ++V+
Sbjct: 34  VIHFLQYPGCVPKPIPSYACRGRCSSYLQVS 64


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 542 GNCQCIIEVTKCVKLPFFSFNCHEELFDTLQ 634
           G C  II++   ++LPF   N  +  F  LQ
Sbjct: 12  GFCHSIIQIPVIIQLPFCGPNVIDHYFRDLQ 42


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 215 PDVI*FNEVDGDTLTTESTRST 280
           PD++ +N  DG+   T +T++T
Sbjct: 113 PDIVLYNNADGNFEVTLATKAT 134


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 215 PDVI*FNEVDGDTLTTESTRST 280
           PD++ +N  DG+   T +T++T
Sbjct: 109 PDIVLYNNADGNFEVTLATKAT 130


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 44  VPLAFHRVLNQANTL 88
           + L FH +L +ANTL
Sbjct: 341 ITLTFHEILKRANTL 355


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 215 PDVI*FNEVDGDTLTTESTRST 280
           PD++ +N  DG+   T  T++T
Sbjct: 113 PDIVLYNNADGNYEVTLMTKAT 134


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 215 PDVI*FNEVDGDTLTTESTRST 280
           PD++ +N  DG+   T  T++T
Sbjct: 118 PDIVLYNNADGNYEVTLMTKAT 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,559
Number of Sequences: 438
Number of extensions: 5444
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)