Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12f13
(425 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 83 2e-17
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 83 2e-17
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 83 2e-17
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 83 2e-17
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 83 2e-17
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 56 3e-09
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 35 0.005
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 33 0.025
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 0.92
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 27 1.2
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 1.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 3.7
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 4.9
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 25 6.5
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 8.6
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = -2
Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
K+ K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 50.4 bits (115), Expect = 1e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
MQIF+KTLTGKTIT E E ++T+ ++K KI DKE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 34
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = -2
Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
K+ K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 50.4 bits (115), Expect = 1e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
MQIF+KTLTGKTIT E E ++T+ ++K KI DKE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 34
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = -2
Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
K+ K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 50.4 bits (115), Expect = 1e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
MQIF+KTLTGKTIT E E ++T+ ++K KI DKE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 34
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = -2
Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
K+ K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = -2
Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
K+ K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 105 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = -2
Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
K+ K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = -2
Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
K+ K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = -2
Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
K+ K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 50.4 bits (115), Expect = 1e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
MQIF+KTLTGKTIT E E ++T+ ++K KI DKE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 34
Score = 50.4 bits (115), Expect = 1e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
MQIF+KTLTGKTIT E E ++T+ ++K KI DKE
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 110
Score = 50.4 bits (115), Expect = 1e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
MQIF+KTLTGKTIT E E ++T+ ++K KI DKE
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 186
Score = 50.4 bits (115), Expect = 1e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
MQIF+KTLTGKTIT E E ++T+ ++K KI DKE
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 262
Score = 50.4 bits (115), Expect = 1e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
MQIF+KTLTGKTIT E E ++T+ ++K KI DKE
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 338
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 83.0 bits (196), Expect = 2e-17
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = -2
Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
K+ K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 50.4 bits (115), Expect = 1e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
MQIF+KTLTGKTIT E E ++T+ ++K KI DKE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 34
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 55.6 bits (128), Expect = 3e-09
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = -2
Query: 133 KXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
K G+P QQRLI+AGKQ+ D K Y+++ S LH+VL LRGG
Sbjct: 33 KEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
Score = 34.7 bits (76), Expect = 0.006
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -1
Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEXCARRSTKTYLCGQTIGRFQN 66
M I +KTLTGK I + +P + V+ +K+++ +KE + G+ + +N
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKN 55
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 35.1 bits (77), Expect = 0.005
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = -2
Query: 115 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRL 11
++QRLI+AG+ L+D +++ Y IQ ++H+V L
Sbjct: 42 ERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 32.7 bits (71), Expect = 0.025
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 229 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 399
+F LLLI D+G + L +++ A DT+T +Y + +DF R +L G+ +
Sbjct: 8 LFKLLLIGDSGVGKSCL------LLRFADDTYTESYISTIGVDFKIRTFELEGKTVK 58
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 0.92
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 229 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 399
+ LLLI D+G + L +++ + D+ T ++ + IDF R +L G+R +
Sbjct: 9 LIKLLLIGDSGVGKSCL------LLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIK 59
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 77 FQLFARKDKSLLIYGHTXLYRQFFA*DRPPSLRVPFRR*WFCPSMF**IFAFLHYY 244
F+L ++K+++ +++ Y DR P + RR W S F +A HYY
Sbjct: 467 FELVSKKNEAWILHYVKSAYADTDVPDRIPEFVLQRRR-WLNGSFFAAAYAICHYY 521
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.1 bits (57), Expect = 1.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -1
Query: 197 TITAETEPAETVADLKQKIADKEXCARRS--TKTYLCGQTIGRFQNYGRL 54
++ + T P T A + D C S T L GQT GRF YG L
Sbjct: 762 SVVSSTRPKNTTAVID---VDSSFCRNYSEDASTSLHGQTAGRFAWYGTL 808
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 234 KNANIHQNIDGQNHYRRNGTRRDGGRSQAKN 142
K+ N Q+I G+++ R+N GRS N
Sbjct: 1518 KDKNKRQDISGESNSRQNNAISRAGRSNGSN 1548
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.0 bits (52), Expect = 4.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 62 HSFGIFQLFARKDKSLLIYGH 124
H FGIF + D S+ YGH
Sbjct: 260 HVFGIFVQYPAADGSIFDYGH 280
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 302 TIPPSVEARAHSQQPLSFISNS 237
T+ PS RAHSQ P S + N+
Sbjct: 59 TMRPSALTRAHSQNPNSSLVNN 80
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.2 bits (50), Expect = 8.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 280 ASTDGGIVQQAADTHTTNYFPSTAIDFH 363
A+ DG Q ++H NY+ +D+H
Sbjct: 2238 AAEDGKETLQIFESHPDNYYQVCFVDYH 2265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,825
Number of Sequences: 5004
Number of extensions: 39865
Number of successful extensions: 113
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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