Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12f13
         (425 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.     83   4e-18
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   0.37 
DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reduct...    24   2.6  
AJ618923-1|CAF02002.1|  155|Anopheles gambiae odorant-binding pr...    23   4.5  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    23   6.0  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   6.0  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    22   7.9  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score = 83.0 bits (196), Expect = 4e-18
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = -2

Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
           K+  K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 29  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76



 Score = 83.0 bits (196), Expect = 4e-18
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = -2

Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
           K+  K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 105 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score = 83.0 bits (196), Expect = 4e-18
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = -2

Query: 145 KLPIKXGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 2
           K+  K G+P DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score = 53.6 bits (123), Expect = 3e-09
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = -1

Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
           MQIF+KTLTGKTIT E EP++T+ ++K KI DKE
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 34



 Score = 53.6 bits (123), Expect = 3e-09
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = -1

Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
           MQIF+KTLTGKTIT E EP++T+ ++K KI DKE
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 110



 Score = 53.6 bits (123), Expect = 3e-09
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = -1

Query: 230 MQIFIKTLTGKTITAETEPAETVADLKQKIADKE 129
           MQIF+KTLTGKTIT E EP++T+ ++K KI DKE
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 186


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 0.37
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 223 YSSKH*RAKPLPP-KRNPQRRWPISSKKLP 137
           Y + H   + +PP +RNP+RR P S  + P
Sbjct: 240 YKNAHASIRKIPPSRRNPRRRSPRSGGRWP 269


>DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reductase
           protein.
          Length = 487

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  RFLLNIVIGHSFGIFQLFARKDKSLLIYG 121
           RFL N+ +G  F + +L  R    LL YG
Sbjct: 99  RFLGNLCLGKDFTLEELRERYHAVLLTYG 127


>AJ618923-1|CAF02002.1|  155|Anopheles gambiae odorant-binding
           protein OBPjj5c protein.
          Length = 155

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 278 LPPPMVELCNRRPIPT 325
           LP  ++E C  RP+P+
Sbjct: 5   LPEQVIETCRARPLPS 20


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 275 PLPPPMVELCNRRPIPTPRIISLQRQLISTPVIKNYQADVQEA 403
           PLPP   EL    P P P   S   + +     +  +AD +EA
Sbjct: 53  PLPPNGDELPEDAPEPVPEDGSPDEEHLEEEQEEEAEADEEEA 95


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 331  NYFPSTAIDFHARNQKLSGRRARSD 405
            N   +TA D H    +L+GR A++D
Sbjct: 1463 NATKNTARDLHHEADQLNGRLAKTD 1487


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 87  LPAKISLC*STGTPFFIGNFLLEIGH 164
           L   I +C   G P+F+   +L I H
Sbjct: 859 LACLIQICTMMGLPWFVAATVLSINH 884


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,418
Number of Sequences: 2352
Number of extensions: 10774
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 34867302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)