Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12f13
(425 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 27 0.12
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 25 0.35
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 24 0.62
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 24 0.82
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 24 0.82
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 23 1.9
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 23 1.9
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 22 3.3
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 4.4
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 5.8
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 5.8
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 26.6 bits (56), Expect = 0.12
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 234 KNANIHQNIDGQNHYRRNGTRRDGGR 157
+NAN +QN D QN ++NG R++ R
Sbjct: 440 QNAN-NQNADNQNANKQNGNRQNDNR 464
Score = 22.2 bits (45), Expect = 2.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 234 KNANIHQNIDGQNHYRRNGTRRDGGR 157
+N N QN + QN R+N +R+G R
Sbjct: 495 QNGN-KQNDNKQNGNRQNDNKRNGNR 519
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 25.0 bits (52), Expect = 0.35
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 147 LLEIGHRLCGFRFGGN 194
+LE+GH +CG RF GN
Sbjct: 118 MLELGHEVCG-RFYGN 132
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 24.2 bits (50), Expect = 0.62
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -1
Query: 329 VVWVSAACCTIPP 291
+VW+ AAC ++PP
Sbjct: 164 LVWLGAACISLPP 176
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.8 bits (49), Expect = 0.82
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 326 VWVSAACCTIPPSVEARAHSQQPLSFISNSVKMQ 225
VW C + +++ R ++ + +SNSVKMQ
Sbjct: 1521 VWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQ 1554
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.8 bits (49), Expect = 0.82
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 326 VWVSAACCTIPPSVEARAHSQQPLSFISNSVKMQ 225
VW C + +++ R ++ + +SNSVKMQ
Sbjct: 1517 VWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQ 1550
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 22.6 bits (46), Expect = 1.9
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = -1
Query: 248 ISNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEXCARRSTKTYL 96
+++++K + + L T+TAETE ++ + +++D++ S + YL
Sbjct: 1 MASAIKALLIVCALFIYTVTAETEEGQSG---RSRVSDEQLNMALSDQRYL 48
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 22.6 bits (46), Expect = 1.9
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = -1
Query: 248 ISNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEXCARRSTKTYL 96
+++++K + + L T+TAETE ++ + +++D++ S + YL
Sbjct: 1 MASAIKALLIVCALFIYTVTAETEEGQSG---RSRVSDEQLNMALSDQRYL 48
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.8 bits (44), Expect = 3.3
Identities = 9/48 (18%), Positives = 22/48 (45%)
Frame = -3
Query: 219 HQNIDGQNHYRRNGTRRDGGRSQAKNCR*RXVCP*INKDLSLRANNWK 76
++N + YR R R++ + + R + ++ + + NN+K
Sbjct: 283 YKNENSYRKYRETSKERSRDRTERERSKERKIISSLSNNYNYNNNNYK 330
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 4.4
Identities = 5/16 (31%), Positives = 11/16 (68%)
Frame = -1
Query: 329 VVWVSAACCTIPPSVE 282
V+W+ A C +P +++
Sbjct: 177 VIWLLALCLAVPQAIQ 192
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.0 bits (42), Expect = 5.8
Identities = 6/35 (17%), Positives = 16/35 (45%)
Frame = -1
Query: 323 WVSAACCTIPPSVEARAHSQQPLSFISNSVKMQIF 219
W+ + C++P ++ + +++ S V F
Sbjct: 161 WIGSVVCSLPQTIVFHLETHPNVTWYSQCVTFNAF 195
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.0 bits (42), Expect = 5.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -1
Query: 383 DNF*LRAWKSIAVEGK*FVVWVSAACCT 300
DN + WK +A+ +WV CT
Sbjct: 467 DNEVIEDWKFVAMVLDRLFLWVFTLACT 494
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,250
Number of Sequences: 438
Number of extensions: 2946
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -