Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12f11
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 1.4
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 27 3.2
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 5.7
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 5.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 7.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 7.5
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 9.9
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 9.9
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 9.9
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 16 CCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAAD 123
CCN++ H + H +N TL C C++ D
Sbjct: 109 CCNHESDHSRKHFEKNKKHCVFVNIITLKCHCYSCD 144
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 27.1 bits (57), Expect = 3.2
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +3
Query: 219 FTSRFLSALGTSNTLAVRCIMLKINSADAELYRPRFI-------FCATRHFVRHTTLFTL 377
FT FLS +G SNT+ V+ + L AD ++R + + F R + +TT L
Sbjct: 151 FTKSFLSKIGESNTITVKGMPL----ADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLAL 206
Query: 378 N*DD 389
DD
Sbjct: 207 EDDD 210
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = +1
Query: 649 DGFCNATNALLNAQAPDLI----ECDPALGLLHIFSAGGDFVVSQACVSTYRDLVDDT 810
DG + L+A P + D LG+ G V QACVS YR ++ T
Sbjct: 551 DGLYYIIDGFLDATCPSKLTFSTSYDTDLGMHSFMIKPGGIVNYQACVSNYRSFINVT 608
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 814 FPYRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRILS 701
+P C + LET +RLR K +DRI+S
Sbjct: 515 YPLTSSEFCDVANSLETLAIIRLRTKQRNGKPQDRIIS 552
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 159 LQHIAPSITL*FFKYVL*MYFTSRFLSA 242
L H++P I+ +KY L F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 7.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -2
Query: 175 GAMCC----NGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCV 35
G CC NG L L R +N+D +L S YT N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 24 LSTITHTFLHNNSTLSLVYSKLSNTSMSVFC 116
L T+THT HN L S L T ++C
Sbjct: 4029 LPTMTHTLPHNRFRLFFFLSWLHATLAEIYC 4059
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 133 LDRNQLQNTDMEVLESLEYTSDNVE 59
+D N +++D++ LEYT+DN E
Sbjct: 8 IDPNSSEDSDIQEDAELEYTADNPE 32
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = -2
Query: 754 LRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSRSCLYTADPSRTV 575
L R K ++ L S P+R K + +KNHP + + L A P +T
Sbjct: 420 LAKRNKDAEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTA 479
Query: 574 T 572
T
Sbjct: 480 T 480
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 96 CWKV*NTLVTTLNCYAKKY 40
CWK T+V L Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,528,562
Number of Sequences: 5004
Number of extensions: 75508
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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