Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12f10
         (932 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    26   1.9  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         25   2.5  
AY994089-1|AAX86002.1|  267|Anopheles gambiae hyp37.7-like precu...    24   5.7  
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    24   5.7  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   5.7  
AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.        24   7.6  
AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.        24   7.6  

>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 671 VRLQVQWVTLLDHVVWSRGIWYRPRLAVRRFVFFVNINYHSLFTI 805
           +R Q+ +     H     GI  R  ++++   FF+NI   +LFT+
Sbjct: 252 IRRQLSFQYFSTHPNGRNGILRRSSMSMKDRNFFINITLFALFTL 296


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 549 LPVHSTCGITSSSSHACNSTA*GSL 623
           +PV S   ++++SS +C+S+A GSL
Sbjct: 233 IPVSSCSPLSTASSASCSSSAAGSL 257


>AY994089-1|AAX86002.1|  267|Anopheles gambiae hyp37.7-like
           precursor protein.
          Length = 267

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 401 QSGVGGHQRIGKMYNFFVGLG 463
           Q+ +G  Q + ++YN+F G+G
Sbjct: 124 QNYIGHTQDVPRIYNYFAGVG 144


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +2

Query: 89  VVLGFVLVSRQRFFNF------VKHVHGVGHIVAAKYHVGRTQAFNATVKT 223
           VVLG+ L  RQ+F  F      V     +  IV+ ++++ + +  NA+  T
Sbjct: 95  VVLGYALYERQKFAYFAAVIVIVSFSLVISQIVSIRWYLNKRKIRNASAST 145


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 508 IEELNKKLAFASESLAEANE 449
           IEELNKK+    +++ EA E
Sbjct: 743 IEELNKKIETLQKTIVEARE 762


>AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 238 RAQKRSLNRSIKRLGSSDVVFSSDYVPNA 152
           + Q +   R +K+LGS+ + F+ +  PNA
Sbjct: 95  KEQTKLQERLLKKLGSNAIPFTFNISPNA 123


>AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 238 RAQKRSLNRSIKRLGSSDVVFSSDYVPNA 152
           + Q +   R +K+LGS+ + F+ +  PNA
Sbjct: 95  KEQTKLQERLLKKLGSNAIPFTFNISPNA 123


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 964,992
Number of Sequences: 2352
Number of extensions: 19637
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 101708946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)