Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12f10
         (932 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ100955-1|AAZ08961.1|  119|Homo sapiens immunoglobulin heavy ch...    32   3.4  
AY392963-1|AAS85902.1|  147|Homo sapiens immunoglobulin heavy ch...    32   3.4  
AF343401-1|AAK51398.1|  106|Homo sapiens psoriasis vulgaris immu...    31   4.5  
DQ100992-1|AAZ08998.1|  120|Homo sapiens immunoglobulin heavy ch...    31   6.0  
AY392970-1|AAS85909.1|  144|Homo sapiens immunoglobulin heavy ch...    31   6.0  
AY392969-1|AAS85908.1|  144|Homo sapiens immunoglobulin heavy ch...    31   6.0  
AY941958-1|AAY33307.1|  121|Homo sapiens anti-rabies virus immun...    31   7.9  
AY941920-1|AAY33269.1|  121|Homo sapiens anti-rabies virus immun...    31   7.9  
AF460501-1|AAM87872.1|   72|Homo sapiens immunoglobulin heavy ch...    31   7.9  

>DQ100955-1|AAZ08961.1|  119|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 119

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -3

Query: 303 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPT 184
           +I   Y++W  ++ ++  M +CAR++ V +  ++ W + T
Sbjct: 74  SISTAYLQWSSLKTSDSGMYYCARRTTVPSAGMDVWGQGT 113


>AY392963-1|AAS85902.1|  147|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 147

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -3

Query: 303 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNA---WVRPTWYLAATMCPT 154
           +I   Y++W  ++ ++ +M +CAR+  V  V+ +A   W R T    ++  PT
Sbjct: 86  SISTAYLQWSSLKASDTAMYYCARQLVVAAVSYDAFDLWGRGTLVTVSSASPT 138


>AF343401-1|AAK51398.1|  106|Homo sapiens psoriasis vulgaris
           immunoglobulin heavy chain protein.
          Length = 106

 Score = 31.5 bits (68), Expect = 4.5
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -3

Query: 303 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPTW 181
           +I   Y++W  ++ ++ +M +CAR S+     ++ W + TW
Sbjct: 64  SISTAYLQWSSLKASDTAMYYCARHSSYSQWLVDYWGQGTW 104


>DQ100992-1|AAZ08998.1|  120|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 120

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 228 FCARRNAYFSPPNAHTANECSSWG 299
           +CAR +  +S PNAH  + C  WG
Sbjct: 95  YCARDSHPYSRPNAHRISACDYWG 118


>AY392970-1|AAS85909.1|  144|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 144

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 303 TIPNCYIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPTWYLAATMCPT 154
           +I   Y++W  ++ ++ +M +CAR+S      L+ W + T    ++  PT
Sbjct: 86  SISTVYLQWSSLKASDTAMYYCARRSEYTGHDLDYWGQGTQVTVSSASPT 135


>AY392969-1|AAS85908.1|  144|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 144

 Score = 31.1 bits (67), Expect = 6.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 288 YIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPTWYLAATMCPT 154
           Y++W  ++ ++ +M FCAR+SA      + W + T    ++  PT
Sbjct: 91  YLQWSSLKASDTAMYFCARQSAYSYGLFDYWGQGTLVTVSSASPT 135


>AY941958-1|AAY33307.1|  121|Homo sapiens anti-rabies virus
           immunoglobulin heavy chain variable region protein.
          Length = 121

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 303 TIPNCYIRWPCVR*AEKSMRFCARKSAVL-TVALNAWVRPT 184
           +I   Y++W  ++ ++ +M FCAR+ AV  T A + W + T
Sbjct: 75  SISTAYLQWSSLKASDTAMYFCARRIAVAGTDAFDIWGQGT 115


>AY941920-1|AAY33269.1|  121|Homo sapiens anti-rabies virus
           immunoglobulin heavy chain variable region protein.
          Length = 121

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 303 TIPNCYIRWPCVR*AEKSMRFCARKSAVL-TVALNAWVRPT 184
           +I   Y++W  +R ++ +M +CAR+ AV  T A + W + T
Sbjct: 75  SISTAYLQWSSLRASDTAMYYCARRLAVAGTDAFDIWGQGT 115


>AF460501-1|AAM87872.1|   72|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 72

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -3

Query: 309 NLTIPNCYIRWPCVR*AEKSMRFCARKS----AVLTVALNAWVRPTW 181
           N +I   Y++W  ++ ++ +M +CAR       V+  A+N W    W
Sbjct: 24  NKSISTAYLQWSSLKASDTAMYYCARSGRKDIVVVPAAINNWYFDLW 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,355,958
Number of Sequences: 237096
Number of extensions: 2847523
Number of successful extensions: 7668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7667
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12214492840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)