Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12f09
         (886 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    26   0.45 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.4  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   4.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.7  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   9.7  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   9.7  

>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 55  CNSRKPNEGRRRNRFVPSLLSDVWN 129
           C+SR+    RR  R+V +   DVWN
Sbjct: 67  CDSRQVANARRIARYVQTKHPDVWN 91


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 336 CLNCVIYVAVVFTLLIFFTLCI 401
           C+    Y  ++FT+ + F LCI
Sbjct: 112 CVYYFYYAFIIFTVHLLFLLCI 133


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 635 FLNRLLKHIDPYPL-SRMYYNAANTMFYT 552
           F+N+L   +DPY L ++   +A N   YT
Sbjct: 134 FVNQLFSAVDPYGLVAQWATDALNPSVYT 162


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 421 IWEFNRRMQSVKNINKVK 368
           IW  NRRM+  K I  +K
Sbjct: 269 IWFQNRRMKLKKEIQAIK 286


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 418 WEFNRRMQSVKNINKVKTTAT*ITQFKHGLSSPSS 314
           W  N+R++  KNI K +  A      K   +SP S
Sbjct: 280 WFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYS 314


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 421 IWEFNRRMQSVKNINKVK 368
           IW  NRRM+  K I  +K
Sbjct: 51  IWFQNRRMKLKKEIQAIK 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,632
Number of Sequences: 336
Number of extensions: 4624
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)