Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12f09
         (886 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D43949-1|BAA07893.2|  882|Homo sapiens KIAA0082 protein.               31   4.2  
BC031890-1|AAH31890.1|  835|Homo sapiens KIAA0082 protein.             31   4.2  
AL353597-2|CAI19603.1|  835|Homo sapiens KIAA0082 protein.             31   4.2  

>D43949-1|BAA07893.2|  882|Homo sapiens KIAA0082 protein.
          Length = 882

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 658 ISVPLLMYCCGCNICIFSPRSIN--NSSRVVRLSRCEATFCNSTIFAYFIIGLLKQRAND 831
           + +  L+YCC   +C+F P +    NS R V     +    +   + + +   L Q  N 
Sbjct: 461 VGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNT 520

Query: 832 DRIISTVVKSTVVEG 876
           D  ++ VV   V++G
Sbjct: 521 DSDVNLVVPLEVIKG 535


>BC031890-1|AAH31890.1|  835|Homo sapiens KIAA0082 protein.
          Length = 835

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 658 ISVPLLMYCCGCNICIFSPRSIN--NSSRVVRLSRCEATFCNSTIFAYFIIGLLKQRAND 831
           + +  L+YCC   +C+F P +    NS R V     +    +   + + +   L Q  N 
Sbjct: 414 VGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNT 473

Query: 832 DRIISTVVKSTVVEG 876
           D  ++ VV   V++G
Sbjct: 474 DSDVNLVVPLEVIKG 488


>AL353597-2|CAI19603.1|  835|Homo sapiens KIAA0082 protein.
          Length = 835

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 658 ISVPLLMYCCGCNICIFSPRSIN--NSSRVVRLSRCEATFCNSTIFAYFIIGLLKQRAND 831
           + +  L+YCC   +C+F P +    NS R V     +    +   + + +   L Q  N 
Sbjct: 414 VGLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNT 473

Query: 832 DRIISTVVKSTVVEG 876
           D  ++ VV   V++G
Sbjct: 474 DSDVNLVVPLEVIKG 488


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,284,457
Number of Sequences: 237096
Number of extensions: 2480205
Number of successful extensions: 10534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10534
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)