Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e24
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    28   0.11 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   1.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   1.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.4  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   3.2  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   5.6  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   5.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.8  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 505 SEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAI 368
           +E F    + F+  V      FE+R N    ++ +L S EKL+T +
Sbjct: 464 AESFDDMKDKFRRWVSAMSRPFEVRFNPHTGRVEVLDSVEKLETLV 509


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +2

Query: 497  FFAVC--IQFFYMF*NRFNFVAQIIT 568
            FFA+   IQFF M  +RF   +QIIT
Sbjct: 1290 FFALLMVIQFFAMMIHRFGTFSQIIT 1315


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +2

Query: 497  FFAVC--IQFFYMF*NRFNFVAQIIT 568
            FFA+   IQFF M  +RF   +QIIT
Sbjct: 1290 FFALLMVIQFFAMMIHRFGTFSQIIT 1315


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 693 PNAISTRWAHC 661
           PNA +T W+HC
Sbjct: 142 PNATNTVWSHC 152


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 693 PNAISTRWAHC 661
           PNA +T W+HC
Sbjct: 142 PNATNTVWSHC 152


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 122 VMFIVEFFVNTLNCQQGIWVHTVIEHFHVVFKAHFSLAKMSL 247
           ++FI   F+ + +C+          +F V F + F+L   SL
Sbjct: 197 LLFIANAFITSQSCENATLYSGDEMYFRVAFPSVFTLIDYSL 238


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 574 GERD--DLRDKIESVLKHVKKLNTNSEKFMVTHETFK 470
           G +D  D +DK+  V   +K+        MVT++  K
Sbjct: 470 GRKDEADYKDKLHKVAPRIKERMMKEGSMMVTYQAQK 506


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -1

Query: 439 ELRLNELDAKLNM---LQSAEKLKTAIVTESKNGTV 341
           ++  N LD  L+     + AEKLK  I    KNG V
Sbjct: 36  QMTRNYLDCVLDKGKCTKEAEKLKKGITETMKNGCV 71


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 350 WHGDVSARHYQTPAF 306
           ++ DVS  HYQ P +
Sbjct: 365 YNQDVSCTHYQNPEY 379


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,252
Number of Sequences: 336
Number of extensions: 4320
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)