Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e24
         (892 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.       25   2.3  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   5.4  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   7.1  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   9.4  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    23   9.4  
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    23   9.4  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    23   9.4  
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    23   9.4  

>DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.
          Length = 403

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 256 LGQERHFRKRKMRFEDDMEVLYDGV 182
           +G +  FR R++RF DD +   DGV
Sbjct: 311 IGLDALFRLRELRFFDDHDSALDGV 335


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -1

Query: 577 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 398
           E E+++   + E ++ H+K      E+          DVG   E+     +ELD     L
Sbjct: 435 ESEKNEALKRQEKLIDHIKTSRLGLEEQKRIKAELSQDVGTSKERIHELQSELDNVREQL 494

Query: 397 QSAE 386
             A+
Sbjct: 495 GDAK 498


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 390 ADCSMLSLASSSFKRNSNCSNLLPTS 467
           + CS LS ASS+   +S   +L PTS
Sbjct: 236 SSCSPLSTASSASCSSSAAGSLCPTS 261


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 693 PNAISTRWAHC 661
           PNA +T W+HC
Sbjct: 185 PNATNTVWSHC 195


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 693 PNAISTRWAHC 661
           PNA +T W+HC
Sbjct: 185 PNATNTVWSHC 195


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = -1

Query: 877 HSKCNTHSFKYRYVHNDTNAXXYNVIDFCKG 785
           H  CN + F  RY     N   Y      KG
Sbjct: 559 HFTCNVNEFAQRYAEEGNNVYMYLYTHRSKG 589


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = -1

Query: 877 HSKCNTHSFKYRYVHNDTNAXXYNVIDFCKG 785
           H  CN + F  RY     N   Y      KG
Sbjct: 559 HFTCNVNEFAQRYAEEGNNVYMYLYTHRSKG 589


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = -1

Query: 877 HSKCNTHSFKYRYVHNDTNAXXYNVIDFCKG 785
           H  CN + F  RY     N   Y      KG
Sbjct: 445 HFTCNVNEFAQRYAEEGNNVYMYLYTHRSKG 475


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 901,738
Number of Sequences: 2352
Number of extensions: 17361
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95920632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)