Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e24
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 34 0.12
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 33 0.36
AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase... 32 0.48
AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase... 32 0.48
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 30 1.9
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 30 1.9
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 30 1.9
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 29 3.4
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 29 3.4
Z83244-7|CAB05829.1| 318|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical pr... 29 4.5
U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alp... 29 4.5
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali... 29 4.5
Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b p... 29 5.9
AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein ... 29 5.9
U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain (p... 28 7.8
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 34.3 bits (75), Expect = 0.12
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Frame = -1
Query: 577 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHET----FKNDVGNRFEQFELRLNELDAK 410
EGE +L D+IE + VKKL +E V +T ++ +Q LN+ + +
Sbjct: 910 EGEAKELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDKNQQ 969
Query: 409 LNMLQ-SAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFS 293
+M+Q +LKT+ T ++NG + + + + + FS
Sbjct: 970 FDMVQEELTRLKTSKET-AENGQLQVQKQMDEEDRRSEFS 1008
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 34.3 bits (75), Expect = 0.12
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Frame = -1
Query: 577 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHET----FKNDVGNRFEQFELRLNELDAK 410
EGE +L D+IE + VKKL +E V +T ++ +Q LN+ + +
Sbjct: 910 EGEAKELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDKNQQ 969
Query: 409 LNMLQ-SAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFS 293
+M+Q +LKT+ T ++NG + + + + + FS
Sbjct: 970 FDMVQEELTRLKTSKET-AENGQLQVQKQMDEEDRRSEFS 1008
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/102 (21%), Positives = 47/102 (46%)
Frame = -1
Query: 553 DKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKT 374
D + + K V+ L TN ++ +T +FK D N FE+ ++L + + AE +
Sbjct: 96 DTVTRISKLVESLKTNLDQ--LTEHSFKEDRPNSVLFFEITHDDLKSSIKKYSDAEGSMS 153
Query: 373 AIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVLGQ 248
++ + K +I + + + I ER ++ ++G+
Sbjct: 154 SLGSVKKISVAPKISEIVEEEDVEILEERKHVEGEIMRIIGE 195
>AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase c
like protein 1,isoform a protein.
Length = 1075
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = -1
Query: 646 GLLKILMRLNFDNKSNALLH-LQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFK 470
G L ++ +F+ N + H + T + D L KIE ++ + + + K
Sbjct: 942 GTLPDQLQRSFNKLKNLIAHCVTTLSQSDQLLSKIEDSIRRISECHEELSKLCAEAGLKG 1001
Query: 469 NDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTE 359
E F L L A+LN++ +++ +VT+
Sbjct: 1002 QKATRAAENFTWNLRLLKAQLNLMNKSQEEAQDVVTQ 1038
>AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase c
like protein 1,isoform b protein.
Length = 1068
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = -1
Query: 646 GLLKILMRLNFDNKSNALLH-LQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFK 470
G L ++ +F+ N + H + T + D L KIE ++ + + + K
Sbjct: 935 GTLPDQLQRSFNKLKNLIAHCVTTLSQSDQLLSKIEDSIRRISECHEELSKLCAEAGLKG 994
Query: 469 NDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTE 359
E F L L A+LN++ +++ +VT+
Sbjct: 995 QKATRAAENFTWNLRLLKAQLNLMNKSQEEAQDVVTQ 1031
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 316 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEK 140
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+K
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 139 L 137
L
Sbjct: 686 L 686
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 316 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEK 140
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+K
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 139 L 137
L
Sbjct: 686 L 686
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 556 ANHHARLQFEGAATRCFCCQNLTASKFSTTPAWSRTMR 669
A H Q AT+CF N+ T PAW +R
Sbjct: 263 AQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIR 300
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 556 ANHHARLQFEGAATRCFCCQNLTASKFSTTPAWSRTMR 669
A H Q AT+CF N+ T PAW +R
Sbjct: 408 AQHAGHSQIPSIATQCFLLSNMFDPSKETEPAWDHDIR 445
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 550 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 449
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 550 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 449
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 550 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 449
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>Z83244-7|CAB05829.1| 318|Caenorhabditis elegans Hypothetical
protein W06F12.3 protein.
Length = 318
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -1
Query: 745 DSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGER 566
D DQVYH +++ +S++ +G F T L+++ R N N ++ L++ R
Sbjct: 246 DQDQVYHAKQLLLRNFQSRK----MGQNFGTFPRALELIKRTETPNYENFIVILKSCSSR 301
>Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical
protein F56G4.6 protein.
Length = 765
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 399 SMLSLASSSFKRNSNCSNLLPTSFLNVSWVT 491
++L L S K NCS +LP SF + +T
Sbjct: 109 TLLKLCKKSIKTTGNCSKILPISFRELPGLT 139
>Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical
protein B0365.3 protein.
Length = 996
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 318 LVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLLPTSFLNVSWVTIN 497
+V +G VP L V A F F D S L+ S R+ +C+N P N+++ + N
Sbjct: 168 IVEVKGGDRVPADLRVVSA-FGFKVDNSSLTGESEPQSRSPDCTNENPLETRNIAFFSTN 226
>U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alpha
subunit protein.
Length = 996
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 318 LVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLLPTSFLNVSWVTIN 497
+V +G VP L V A F F D S L+ S R+ +C+N P N+++ + N
Sbjct: 168 IVEVKGGDRVPADLRVVSA-FGFKVDNSSLTGESEPQSRSPDCTNENPLETRNIAFFSTN 226
>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
pathway homologprotein 1 protein.
Length = 1451
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 295 SERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVL 194
S++ D +K+A+ +G+E ++R+ EDD E L
Sbjct: 182 SQKAKDEMKMAYQVGREEALQQRRNDLEDDEENL 215
>Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical
protein F38E11.6a protein.
Length = 416
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -1
Query: 565 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 443
D+L +I +V +++ N + + F+V +FKN +F++
Sbjct: 303 DNLTAQISAVYRYIASHNRHDDNFLVVVPSFKNQDAEKFKR 343
>AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b
protein protein.
Length = 157
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 249 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 392
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein
protein.
Length = 703
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 249 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 392
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 8 protein.
Length = 813
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 284 DAFRKYGQMLVFGNVARKRHRAIFAFRYDGGFQFFGRLQHVKFGVEFVQTQFKLLK 451
D F + + F + A +R R+ + F GGF F + K+ + + Q QFK+L+
Sbjct: 83 DRFGTFDDVKQFEDNA-ERARSFYGFGGFGGFGFDESVFEYKYRMSYQQYQFKILE 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,512,659
Number of Sequences: 27780
Number of extensions: 413523
Number of successful extensions: 1342
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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