Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e21
(241 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VH69 Cluster: 40S ribosomal protein S29; n=31; Eukary... 116 1e-25
UniRef50_P62273 Cluster: 40S ribosomal protein S29; n=66; Eukary... 104 3e-22
UniRef50_P90983 Cluster: Ribosomal protein, small subunit protei... 98 4e-20
UniRef50_Q680P8 Cluster: 40S ribosomal protein S29; n=4; Eukaryo... 95 3e-19
UniRef50_UPI0000E202DC Cluster: PREDICTED: similar to ribosomal ... 93 1e-18
UniRef50_A1DNZ6 Cluster: 40S ribosomal protein S29, putative; n=... 91 4e-18
UniRef50_O74329 Cluster: 40S ribosomal protein S29; n=12; cellul... 89 2e-17
UniRef50_Q6CFB0 Cluster: Similar to sp|P41057 Saccharomyces cere... 87 9e-17
UniRef50_Q1DQB3 Cluster: Predicted protein; n=4; Pezizomycotina|... 84 5e-16
UniRef50_Q8INN0 Cluster: CG8495-PC, isoform C; n=1; Drosophila m... 75 2e-13
UniRef50_UPI0001554864 Cluster: PREDICTED: similar to ribosomal ... 68 5e-11
UniRef50_Q4Q817 Cluster: Ribosomal protein s29, putative; n=5; T... 68 5e-11
UniRef50_Q22MB0 Cluster: Putative uncharacterized protein; n=1; ... 67 8e-11
UniRef50_P54110 Cluster: 30S ribosomal protein S14P; n=7; Methan... 66 1e-10
UniRef50_O28368 Cluster: 30S ribosomal protein S14P; n=2; cellul... 65 3e-10
UniRef50_O05635 Cluster: 30S ribosomal protein S14P; n=11; Therm... 62 3e-09
UniRef50_Q74NE6 Cluster: 30S ribosomal protein S14P; n=2; Archae... 60 7e-09
UniRef50_Q013Q2 Cluster: RS29_CULQU 40S ribosomal protein S29; n... 60 9e-09
UniRef50_Q8SS73 Cluster: 40S ribosomal protein S29; n=1; Encepha... 60 1e-08
UniRef50_Q97BW2 Cluster: 30S ribosomal protein S14P; n=12; Archa... 54 5e-07
UniRef50_P62012 Cluster: 30S ribosomal protein S14P; n=10; Archa... 54 8e-07
UniRef50_Q9HPC0 Cluster: 30S ribosomal protein S14P; n=8; Euryar... 50 8e-06
UniRef50_Q7R0P0 Cluster: GLP_79_44835_45248; n=1; Giardia lambli... 50 1e-05
UniRef50_P26816 Cluster: 30S ribosomal protein S14P; n=3; Haloba... 48 5e-05
UniRef50_A2ZKX8 Cluster: Putative uncharacterized protein; n=3; ... 45 3e-04
UniRef50_Q8XHT6 Cluster: 30S ribosomal protein S14 type Z; n=83;... 39 0.019
UniRef50_UPI000023DF20 Cluster: hypothetical protein FG07181.1; ... 39 0.025
UniRef50_P95911 Cluster: Orf c01013 protein; n=1; Sulfolobus sol... 36 0.23
UniRef50_Q7NEG5 Cluster: 30S ribosomal protein S14 type Z; n=3; ... 33 1.2
UniRef50_UPI0000F32986 Cluster: UPI0000F32986 related cluster; n... 31 4.9
UniRef50_Q9GTH4 Cluster: Nuclear receptor NHR-43; n=3; Caenorhab... 31 4.9
UniRef50_Q3IPC2 Cluster: Predicted helicase; n=2; Halobacteriace... 31 4.9
UniRef50_UPI0000F211F6 Cluster: PREDICTED: hypothetical protein;... 31 6.5
UniRef50_Q9LHI5 Cluster: Gb|AAF48080.1; n=7; Magnoliophyta|Rep: ... 31 6.5
UniRef50_Q9PQP7 Cluster: 30S ribosomal protein S14 type Z; n=145... 31 6.5
UniRef50_O81630 Cluster: F8M12.22 protein; n=8; Arabidopsis thal... 30 8.6
UniRef50_Q20595 Cluster: Putative uncharacterized protein; n=3; ... 30 8.6
>UniRef50_Q9VH69 Cluster: 40S ribosomal protein S29; n=31;
Eukaryota|Rep: 40S ribosomal protein S29 - Drosophila
melanogaster (Fruit fly)
Length = 56
Score = 116 bits (278), Expect = 1e-25
Identities = 47/54 (87%), Positives = 51/54 (94%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MG A +WYSHPR+YGQGSR CR+CSNRHGLIRKYGLNICRQCFREYA+DIGFKK
Sbjct: 1 MGFATLWYSHPRKYGQGSRCCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54
>UniRef50_P62273 Cluster: 40S ribosomal protein S29; n=66;
Eukaryota|Rep: 40S ribosomal protein S29 - Homo sapiens
(Human)
Length = 56
Score = 104 bits (250), Expect = 3e-22
Identities = 42/54 (77%), Positives = 49/54 (90%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
>UniRef50_P90983 Cluster: Ribosomal protein, small subunit protein
29; n=18; Eukaryota|Rep: Ribosomal protein, small
subunit protein 29 - Caenorhabditis elegans
Length = 56
Score = 97.9 bits (233), Expect = 4e-20
Identities = 38/54 (70%), Positives = 46/54 (85%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+CFRE A DIGFKK
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKK 54
>UniRef50_Q680P8 Cluster: 40S ribosomal protein S29; n=4;
Eukaryota|Rep: 40S ribosomal protein S29 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 56
Score = 95.1 bits (226), Expect = 3e-19
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>UniRef50_UPI0000E202DC Cluster: PREDICTED: similar to ribosomal
protein S29; n=4; Theria|Rep: PREDICTED: similar to
ribosomal protein S29 - Pan troglodytes
Length = 56
Score = 92.7 bits (220), Expect = 1e-18
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MGH +++SHP+++GQGSRSCR SNRHG IRKYGLN CRQCF +YA DIGF K
Sbjct: 1 MGHQQLYWSHPQKFGQGSRSCRVYSNRHGRIRKYGLNKCRQCFHQYAKDIGFIK 54
>UniRef50_A1DNZ6 Cluster: 40S ribosomal protein S29, putative; n=2;
Fungi/Metazoa group|Rep: 40S ribosomal protein S29,
putative - Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / NRRL 181)(Aspergillus fischerianus (strain ATCC
1020 / DSM 3700 / NRRL 181))
Length = 86
Score = 91.1 bits (216), Expect = 4e-18
Identities = 36/54 (66%), Positives = 45/54 (83%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
M H ++WYS PR++G+GSR CR C++R GLIRKYG++ICRQCFRE A DIGF K
Sbjct: 1 MTHESVWYSRPRKFGKGSRECRVCAHRAGLIRKYGMDICRQCFREKAQDIGFYK 54
>UniRef50_O74329 Cluster: 40S ribosomal protein S29; n=12; cellular
organisms|Rep: 40S ribosomal protein S29 -
Schizosaccharomyces pombe (Fission yeast)
Length = 56
Score = 88.6 bits (210), Expect = 2e-17
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
M H N+W+SHPR+YG+GSR C R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54
>UniRef50_Q6CFB0 Cluster: Similar to sp|P41057 Saccharomyces
cerevisiae YLR388w YS29A ribosomal protein S29; n=1;
Yarrowia lipolytica|Rep: Similar to sp|P41057
Saccharomyces cerevisiae YLR388w YS29A ribosomal protein
S29 - Yarrowia lipolytica (Candida lipolytica)
Length = 78
Score = 86.6 bits (205), Expect = 9e-17
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
M H NIW+SHPR YG+G R CR +N++ +IRKYGLN+CRQ FRE A DIGF K
Sbjct: 23 MAHENIWFSHPRHYGKGGRKCRITNNQNAVIRKYGLNLCRQSFREKAADIGFTK 76
>UniRef50_Q1DQB3 Cluster: Predicted protein; n=4;
Pezizomycotina|Rep: Predicted protein - Coccidioides
immitis
Length = 123
Score = 84.2 bits (199), Expect = 5e-16
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
M H +++YS PR YG+GSR CR C+++ GLIRKYGL +CRQCFRE + DIGF K
Sbjct: 1 MTHESVFYSRPRNYGKGSRQCRVCAHKAGLIRKYGLLVCRQCFREKSQDIGFVK 54
>UniRef50_Q8INN0 Cluster: CG8495-PC, isoform C; n=1; Drosophila
melanogaster|Rep: CG8495-PC, isoform C - Drosophila
melanogaster (Fruit fly)
Length = 55
Score = 75.4 bits (177), Expect = 2e-13
Identities = 31/33 (93%), Positives = 33/33 (100%)
Frame = -1
Query: 100 RSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
R+CSNRHGLIRKYGLNICRQCFREYA+DIGFKK
Sbjct: 21 RACSNRHGLIRKYGLNICRQCFREYANDIGFKK 53
>UniRef50_UPI0001554864 Cluster: PREDICTED: similar to ribosomal
protein S29; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to ribosomal protein S29 -
Ornithorhynchus anatinus
Length = 168
Score = 67.7 bits (158), Expect = 5e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = -1
Query: 100 RSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
R CSNRHGLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 85 RVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 117
>UniRef50_Q4Q817 Cluster: Ribosomal protein s29, putative; n=5;
Trypanosomatidae|Rep: Ribosomal protein s29, putative -
Leishmania major
Length = 57
Score = 67.7 bits (158), Expect = 5e-11
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = -1
Query: 163 MGHANIWYSHPR-RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MGH + W S + G+G+R C CSN+ LIRKY LN+CRQCFRE A IGF K
Sbjct: 1 MGHLDQWRSRQKIGMGKGARCCVICSNQKALIRKYELNVCRQCFRENAEHIGFTK 55
>UniRef50_Q22MB0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 239
Score = 66.9 bits (156), Expect = 8e-11
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = -1
Query: 148 IWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
+W +HPR YG+ S+ CR C R GLI KY + CR+CFRE A IGF K
Sbjct: 5 LWRTHPRNYGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPHIGFVK 53
>UniRef50_P54110 Cluster: 30S ribosomal protein S14P; n=7;
Methanococcales|Rep: 30S ribosomal protein S14P -
Methanococcus jannaschii
Length = 53
Score = 66.5 bits (155), Expect = 1e-10
Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Frame = -1
Query: 130 RRYGQGSRSCRSCSN-RHGLIRKYGLNICRQCFREYAHDIGFKK 2
++YG G R C+ C + GLIRKYGLN+CRQCFRE AH +GFKK
Sbjct: 8 KKYGYGIRPCQRCGHVGPGLIRKYGLNLCRQCFREIAHKLGFKK 51
>UniRef50_O28368 Cluster: 30S ribosomal protein S14P; n=2; cellular
organisms|Rep: 30S ribosomal protein S14P -
Archaeoglobus fulgidus
Length = 51
Score = 64.9 bits (151), Expect = 3e-10
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = -1
Query: 124 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
+G+G+ CR C R GLIR YGL +CRQCFRE A ++GFKK
Sbjct: 9 FGRGANECRRCGRRRGLIRMYGLYLCRQCFREVASELGFKK 49
>UniRef50_O05635 Cluster: 30S ribosomal protein S14P; n=11;
Thermoprotei|Rep: 30S ribosomal protein S14P -
Sulfolobus acidocaldarius
Length = 54
Score = 61.7 bits (143), Expect = 3e-09
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = -1
Query: 130 RRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
RR+G+G + C+ C +R +I+KYGL +CRQCFRE A+ +GF+K
Sbjct: 10 RRFGKGVQLCKRCGSRDSVIQKYGLYLCRQCFREVAYPMGFRK 52
>UniRef50_Q74NE6 Cluster: 30S ribosomal protein S14P; n=2;
Archaea|Rep: 30S ribosomal protein S14P - Nanoarchaeum
equitans
Length = 69
Score = 60.5 bits (140), Expect = 7e-09
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = -1
Query: 130 RRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
R++G+G+R C C G+IR+YGL +C+ CF+E AH++GF K
Sbjct: 24 RKFGKGARRCERCGRYDGIIRRYGLYLCKDCFKEVAHELGFFK 66
>UniRef50_Q013Q2 Cluster: RS29_CULQU 40S ribosomal protein S29; n=1;
Ostreococcus tauri|Rep: RS29_CULQU 40S ribosomal protein
S29 - Ostreococcus tauri
Length = 157
Score = 60.1 bits (139), Expect = 9e-09
Identities = 25/36 (69%), Positives = 28/36 (77%)
Frame = -1
Query: 109 RSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
R R C N+ +IRKY LNICRQCFREYA DIGF+K
Sbjct: 120 RRSRVCENQWAIIRKYNLNICRQCFREYAKDIGFQK 155
Score = 36.3 bits (80), Expect = 0.13
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSR 107
MGH+++W SHP YG+GSR
Sbjct: 23 MGHSDVWASHPANYGKGSR 41
>UniRef50_Q8SS73 Cluster: 40S ribosomal protein S29; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S29
- Encephalitozoon cuniculi
Length = 55
Score = 59.7 bits (138), Expect = 1e-08
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = -1
Query: 142 YSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGF 8
+SH + +G+GSRSC SC G+IRK L +CR+CFREYA DIGF
Sbjct: 9 HSHRKPFGKGSRSCVSCYTFRGIIRK--LMMCRRCFREYAGDIGF 51
>UniRef50_Q97BW2 Cluster: 30S ribosomal protein S14P; n=12;
Archaea|Rep: 30S ribosomal protein S14P - Thermoplasma
volcanium
Length = 53
Score = 54.4 bits (125), Expect = 5e-07
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = -1
Query: 130 RRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
++YG C C + G++RKYGL++CRQCFRE A +GF+K
Sbjct: 10 KKYGHID-GCVRCGRKRGIVRKYGLHLCRQCFRETARQLGFEK 51
>UniRef50_P62012 Cluster: 30S ribosomal protein S14P; n=10;
Archaea|Rep: 30S ribosomal protein S14P - Pyrococcus
abyssi
Length = 56
Score = 53.6 bits (123), Expect = 8e-07
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = -1
Query: 133 PRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
PR++G+G+R C C +IR +GL +CR CFRE A +GF+K
Sbjct: 11 PRKFGKGARRCIRCGQYGPIIRIHGLMLCRHCFREVAPKLGFRK 54
>UniRef50_Q9HPC0 Cluster: 30S ribosomal protein S14P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S14P -
Halobacterium salinarium (Halobacterium halobium)
Length = 52
Score = 50.4 bits (115), Expect = 8e-06
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = -1
Query: 112 SRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
+ CR C GL+ KY + +CRQCFRE A +GFKK
Sbjct: 14 THECRRCGREQGLVGKYDIWLCRQCFREIARSMGFKK 50
>UniRef50_Q7R0P0 Cluster: GLP_79_44835_45248; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_44835_45248 - Giardia lamblia
ATCC 50803
Length = 137
Score = 50.0 bits (114), Expect = 1e-05
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = -1
Query: 109 RSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
R CR C N + + RKYGL ICR+CF+E A IGF K
Sbjct: 100 RECRICGNYNSVYRKYGLFICRRCFKENAGKIGFVK 135
>UniRef50_P26816 Cluster: 30S ribosomal protein S14P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S14P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 61
Score = 47.6 bits (108), Expect = 5e-05
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = -1
Query: 127 RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
R GQ SC+ C GL+ KY + +CRQCFRE + +GF+K
Sbjct: 19 RTGQ-LESCQRCGREQGLVGKYDIWLCRQCFREISRGMGFRK 59
>UniRef50_A2ZKX8 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 45.2 bits (102), Expect = 3e-04
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSN 86
MGH+N+W SHP+ YG GSR C CS+
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCFVCSS 26
>UniRef50_Q8XHT6 Cluster: 30S ribosomal protein S14 type Z; n=83;
Bacteria|Rep: 30S ribosomal protein S14 type Z -
Clostridium perfringens
Length = 61
Score = 39.1 bits (87), Expect = 0.019
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 145 WYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAH 20
W P+ + CR C H +++K+G ICR CFRE A+
Sbjct: 10 WKKEPKYKTRAYTRCRLCGRPHSVLKKFG--ICRICFRELAY 49
>UniRef50_UPI000023DF20 Cluster: hypothetical protein FG07181.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG07181.1 - Gibberella zeae PH-1
Length = 59
Score = 38.7 bits (86), Expect = 0.025
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRS 95
M H ++W S PR YG+GSRSC S
Sbjct: 1 MSHESVWNSRPRNYGKGSRSCAS 23
>UniRef50_P95911 Cluster: Orf c01013 protein; n=1; Sulfolobus
solfataricus|Rep: Orf c01013 protein - Sulfolobus
solfataricus
Length = 156
Score = 35.5 bits (78), Expect = 0.23
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = -3
Query: 206 LICCSLARNNLIS*NGPRKYLVFSPSQIRTRIPVMPILLQQAWLNPQVRFEHMQTVL 36
L+ C + +N+LIS + P +++ PS++ + P ILL+ ++ P F++ +L
Sbjct: 49 LLICLIGKNSLIS-SDPLAVILYLPSEVFSMTPSSSILLRSGYMEPGEGFQNPHVIL 104
>UniRef50_Q7NEG5 Cluster: 30S ribosomal protein S14 type Z; n=3;
Bacteria|Rep: 30S ribosomal protein S14 type Z -
Gloeobacter violaceus
Length = 68
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 103 CRSCSNRHGLIRKYGLNICRQCFREYAH 20
C C G IR +GL CR CFRE AH
Sbjct: 31 CWRCGRPRGYIRDFGL--CRICFREMAH 56
>UniRef50_UPI0000F32986 Cluster: UPI0000F32986 related cluster; n=1;
Bos taurus|Rep: UPI0000F32986 UniRef100 entry - Bos
Taurus
Length = 54
Score = 31.1 bits (67), Expect = 4.9
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 136 HPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGF 8
H +G +R CR + + L+ + + +CR+C + +I F
Sbjct: 8 HQALFGSQARGCRKVNTLYLLVPYFSITLCRRCCEQNNKNISF 50
>UniRef50_Q9GTH4 Cluster: Nuclear receptor NHR-43; n=3;
Caenorhabditis|Rep: Nuclear receptor NHR-43 -
Caenorhabditis elegans
Length = 459
Score = 31.1 bits (67), Expect = 4.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 103 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
CR C R+ + +G++ICR C + + KK
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>UniRef50_Q3IPC2 Cluster: Predicted helicase; n=2;
Halobacteriaceae|Rep: Predicted helicase - Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678)
Length = 1767
Score = 31.1 bits (67), Expect = 4.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 133 PRRYGQGSRSCRSCSNRHGLIRK-YGLNICRQCFREY 26
P G CR+C+ H R Y L+ CR C +EY
Sbjct: 488 PHLSDAGDIECRTCAQEHDRTRTAYPLSFCRGCGQEY 524
>UniRef50_UPI0000F211F6 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 446
Score = 30.7 bits (66), Expect = 6.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 195 LVSEKQFNFLKWATQIFGIL 136
LV E+ N L WA QIFG+L
Sbjct: 264 LVEERSINILSWALQIFGLL 283
>UniRef50_Q9LHI5 Cluster: Gb|AAF48080.1; n=7; Magnoliophyta|Rep:
Gb|AAF48080.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 292
Score = 30.7 bits (66), Expect = 6.5
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 63 YLRIK-PCLLEQDRHDRDPCPYLRG*EY-QIFAWPILR 170
+ RIK PCLL HDRDP PYL E Q+ W + R
Sbjct: 38 FYRIKLPCLL----HDRDPNPYLTTSELSQLMKWKLSR 71
>UniRef50_Q9PQP7 Cluster: 30S ribosomal protein S14 type Z; n=145;
Bacteria|Rep: 30S ribosomal protein S14 type Z -
Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
Length = 61
Score = 30.7 bits (66), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 103 CRSCSNRHGLIRKYGLNICRQCFREYAH 20
C C H + RK+G +CR CFR+ A+
Sbjct: 24 CVRCGRPHAVNRKFG--VCRLCFRDLAY 49
>UniRef50_O81630 Cluster: F8M12.22 protein; n=8; Arabidopsis
thaliana|Rep: F8M12.22 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1662
Score = 30.3 bits (65), Expect = 8.6
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 164 NGPRKYLVFSPSQIRTRIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS 21
NG RK+L P Q+RT M L ++ LN ++R +Q L + S
Sbjct: 646 NGQRKHL---PDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKAMS 690
>UniRef50_Q20595 Cluster: Putative uncharacterized protein; n=3;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 727
Score = 30.3 bits (65), Expect = 8.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 116 RIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 15
RIP P++L+Q WL R E R+CS H
Sbjct: 27 RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,113,577
Number of Sequences: 1657284
Number of extensions: 4708265
Number of successful extensions: 12248
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 11975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12244
length of database: 575,637,011
effective HSP length: 58
effective length of database: 479,514,539
effective search space used: 10069805319
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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