Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e21
(241 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 98 8e-22
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 31 0.11
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 31 0.11
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 30 0.19
Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical pr... 29 0.33
AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical... 28 0.77
Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical pr... 27 1.3
U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 27 1.3
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 27 2.3
Z81510-3|CAB04163.1| 311|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z74032-6|CAA98468.2| 234|Caenorhabditis elegans Hypothetical pr... 25 7.2
AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical... 25 7.2
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 25 7.2
Z35603-2|CAA84674.1| 418|Caenorhabditis elegans Hypothetical pr... 25 9.5
U64598-12|AAX88835.1| 408|Caenorhabditis elegans Choline kinase... 25 9.5
U64598-11|AAK39220.1| 429|Caenorhabditis elegans Choline kinase... 25 9.5
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 25 9.5
AL022716-3|CAA18771.1| 272|Caenorhabditis elegans Hypothetical ... 25 9.5
AF026214-7|AAP68943.1| 640|Caenorhabditis elegans Hypothetical ... 25 9.5
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 97.9 bits (233), Expect = 8e-22
Identities = 38/54 (70%), Positives = 46/54 (85%)
Frame = -1
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+CFRE A DIGFKK
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKK 54
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.11
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 103 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
CR C R+ + +G++ICR C + + KK
Sbjct: 47 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 31.1 bits (67), Expect = 0.11
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 103 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
CR C R+ + +G++ICR C + + KK
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 116 RIPVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 15
RIP P++L+Q WL R E R+CS H
Sbjct: 27 RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60
>Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical
protein K10D6.1 protein.
Length = 457
Score = 29.5 bits (63), Expect = 0.33
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 104 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 3
M I + + WL+P ++F+H+ Q + H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134
>AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical
protein T15B7.16 protein.
Length = 435
Score = 28.3 bits (60), Expect = 0.77
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 104 MPILLQQAWLNPQVRFEHMQTVLQRV 27
+ +L Q W +P++RF+H+ LQ +
Sbjct: 80 LDLLFSQIWHDPRLRFDHLTNCLQNL 105
>Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical
protein F16A11.1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 79 HACWSRIGMTGILVRICEGENTKYLRG-PF*EIKL-FLANEQQIRYTFKMAN 228
H W + G+L+ I EGE YL G P E + FL+N Q F A+
Sbjct: 453 HENWQPGDVIGVLLNIPEGEVVFYLNGTPLKEPETEFLSNRQPSEGVFAAAS 504
>U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily
assigned gene nameprotein 293 protein.
Length = 385
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 158 AHFKKLNCFSLTSNKLDTPSRWRT 229
A F +LNC ++T+N+ P+ WRT
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRT 277
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 169 LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 62
LK A W+ +P+R G +R C SC ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518
>Z81510-3|CAB04163.1| 311|Caenorhabditis elegans Hypothetical
protein F21D9.4 protein.
Length = 311
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 240 LFVQVRHLEGVSNLLLVSEKQFNFLKWATQIFGILTLADTDKDP 109
+F Q+ HL G +N + F A + + + DT+K+P
Sbjct: 11 VFDQLIHLAGATNGWAHQPYDYRFYSQAYDGYWFVAMVDTEKEP 54
>Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical
protein T07D10.3 protein.
Length = 377
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 70 RKYGLNICRQCFREYAHDIGFK 5
R YGL +C C R + + GF+
Sbjct: 234 RAYGLYVCTTCQRRFRDNKGFQ 255
>Z74032-6|CAA98468.2| 234|Caenorhabditis elegans Hypothetical
protein F35B12.8 protein.
Length = 234
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 172 IKLFLANEQQIRYTFKMANLNEK 240
+ +FL E ++ Y+F + NLNE+
Sbjct: 63 LTIFLEQEVEMAYSFGLENLNEQ 85
>AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical
protein Y41C4A.9 protein.
Length = 577
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 206 LICCSLARNNLIS*N-GPRKYLVFSPSQIRTRIPVMPILLQQAWLNPQVRFEHMQT 42
L+C L +++ + G +L+ S + T + I+LQQ W N Q+ F H+ +
Sbjct: 282 LVCSPLGLRMILNGDDGNEAHLISSINM--TIVDRTDIMLQQNWENLQLIFSHLHS 335
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 49 CRQCFREYAHDIGFKK 2
C CF+EYAH G +
Sbjct: 330 CAICFKEYAHQAGLSE 345
>Z35603-2|CAA84674.1| 418|Caenorhabditis elegans Hypothetical
protein T02C12.2 protein.
Length = 418
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 85 RHGLIRKYGLNICRQCFREYAHDIGFK 5
RH L+ + CR CF+E+ + G K
Sbjct: 362 RHELLPNTYTHFCRTCFQEFNYVHGVK 388
>U64598-12|AAX88835.1| 408|Caenorhabditis elegans Choline kinase a
protein 2, isoformb protein.
Length = 408
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 161 GPRKYLVFSPSQIRTRIPVMPILLQQAWLNPQVRFEHMQT-VLQRVCS*HRIQ 6
GP+ Y +FS ++ IP P+ ++ HM T + +RV H+++
Sbjct: 117 GPKLYGIFSGGRLEEYIPSRPLSCH------EISLAHMSTKIAKRVAKVHQLE 163
>U64598-11|AAK39220.1| 429|Caenorhabditis elegans Choline kinase a
protein 2, isoforma protein.
Length = 429
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 161 GPRKYLVFSPSQIRTRIPVMPILLQQAWLNPQVRFEHMQT-VLQRVCS*HRIQ 6
GP+ Y +FS ++ IP P+ ++ HM T + +RV H+++
Sbjct: 138 GPKLYGIFSGGRLEEYIPSRPLSCH------EISLAHMSTKIAKRVAKVHQLE 184
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 115 GSRSCRSCSNRHG-LIRKYGLNICRQC 38
GSR+ R G LI + LN+CRQC
Sbjct: 326 GSRTPALSRVREGVLIAELDLNLCRQC 352
>AL022716-3|CAA18771.1| 272|Caenorhabditis elegans Hypothetical
protein C24F3.2 protein.
Length = 272
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 55 SNRTCGLSHACWSRIGMTGILVRICEGENTKYLR 156
S TC +SH C +++G C G N K++R
Sbjct: 223 SGATCSVSHTCGAKLGTFIASGSKCNGCN-KFVR 255
>AF026214-7|AAP68943.1| 640|Caenorhabditis elegans Hypothetical
protein F52H2.1 protein.
Length = 640
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -1
Query: 94 CSNRHGLIRKYGLNICRQCFREYAHD 17
C L G+NI R CF Y H+
Sbjct: 164 CVGYAKLFLNLGVNIVRVCFGHYGHE 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,891,772
Number of Sequences: 27780
Number of extensions: 114120
Number of successful extensions: 322
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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