Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e20
         (442 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing...    34   1.6  
UniRef50_A4TWK0 Cluster: Glutamine synthetase adenylyltransferas...    31   8.3  
UniRef50_A3Q486 Cluster: Transcriptional regulator, TetR family;...    31   8.3  

>UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing
           protein 13B.; n=1; Takifugu rubripes|Rep: Ankyrin repeat
           domain-containing protein 13B. - Takifugu rubripes
          Length = 634

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -1

Query: 181 PSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASL 68
           PSC F  PP  TVL    R  L++++  LL  +IQ SL
Sbjct: 506 PSCVFEVPPGYTVLGSKQRDTLREDEEDLLQFAIQQSL 543


>UniRef50_A4TWK0 Cluster: Glutamine synthetase adenylyltransferase;
           n=3; Magnetospirillum|Rep: Glutamine synthetase
           adenylyltransferase - Magnetospirillum gryphiswaldense
          Length = 1137

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 424 GFSPVIXK*MMNHKLRAXLVVXPRILRSPPPTXPXIEDVVMATNQA 287
           G +P + + +  H  +   VV P     PPPT   IED+  A ++A
Sbjct: 732 GNAPKLAEHLARHTTQLDAVVAPSFFEPPPPTERLIEDLNKALSEA 777


>UniRef50_A3Q486 Cluster: Transcriptional regulator, TetR family;
           n=1; Mycobacterium sp. JLS|Rep: Transcriptional
           regulator, TetR family - Mycobacterium sp. (strain JLS)
          Length = 236

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -1

Query: 163 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRXXXSDSF 8
           TP   TVL+D I  VLKD+ TA+LS S+        I R  V      S+ +
Sbjct: 155 TPKLSTVLHDAIEPVLKDS-TAVLSGSVTLDEVVDLIVRMAVSHYFMPSNDY 205


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,665,703
Number of Sequences: 1657284
Number of extensions: 5615283
Number of successful extensions: 14160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14150
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)