Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e20
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   1.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.3  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   1.7  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   3.0  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   3.9  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   6.8  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   6.8  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    24   9.0  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 175 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 80
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -1

Query: 274 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 95
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 94  LSASIQASLPSSEIYRQL 41
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 38  YQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 148
           Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 118 YKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 337 PPTXPXIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCY 170
           P     I +  + T++A++ Y   +     V H E  LKV  II T  Y  D S Y
Sbjct: 13  PKLPESISESRLWTSEALVRYPEIV-----VKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 35  IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 136
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 184 DPSCYFSTPPFDTVLYDNIRT 122
           DP+ Y    PFDTV  D + T
Sbjct: 706 DPAAYDKISPFDTVDIDGLTT 726


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 110 QQNCS-SLCIYSSFSPFLRDLPPVGRFSP 27
           Q+ C+  LC YS  SP  R+LP    F P
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHP 523


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 240 IRNWPSRFLLS*APESTSSIPPATFQ 163
           IR W S+F+ S A +    + P T Q
Sbjct: 128 IREWSSKFMNSKASQKQQMLSPETMQ 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,396
Number of Sequences: 5004
Number of extensions: 22964
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)