Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e20
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0220 - 15813809-15815380                                         27   6.7  
05_01_0493 + 4113869-4116728,4116859-4117370                           27   6.7  
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321...    27   6.7  
11_02_0038 - 7631462-7634428,7635975-7636250                           27   8.8  
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    27   8.8  

>09_04_0220 - 15813809-15815380
          Length = 523

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = -1

Query: 235 ELALKVSSIIGTRVYVFDPSCYFSTPPFDTV----LYDNIRTVLKDNKTALLSASIQASL 68
           EL   V+ ++G     F P CYF     + +    +YD ++  L  +      A +  S 
Sbjct: 29  ELRAAVARLLGRATRAFSPYCYFDVTETEGMGTNEIYDAVQLYLSSSAAPAAGARLTLSR 88

Query: 67  P 65
           P
Sbjct: 89  P 89


>05_01_0493 + 4113869-4116728,4116859-4117370
          Length = 1123

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 163 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDS 32
           +PP+D  LY  +   + D   +L  A++     S E+YR  + S
Sbjct: 753 SPPWDVTLYQKLEIGVSDVARSLTPANVIGHGWSGEVYRASMPS 796


>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
            16032434-16032715,16032790-16032948,16033034-16033390,
            16033482-16033622,16033919-16034045,16034121-16034263,
            16034740-16034917,16035019-16035552,16035628-16035812,
            16036551-16036637,16036710-16036850,16036896-16037175,
            16037944-16038020,16038326-16039138,16039292-16039801,
            16039926-16040056,16040192-16040246,16040364-16040564,
            16040640-16040909,16041103-16041184,16041271-16041434,
            16041532-16041690,16041762-16042083,16042158-16042544,
            16042811-16042999,16043233-16043317,16043458-16043753,
            16043862-16043965,16044484-16044513,16044602-16044817,
            16044923-16045540,16045718-16045993,16046619-16046762,
            16046854-16046962,16047291-16047475,16047557-16047670,
            16048348-16048479,16048929-16049249,16049424-16049891,
            16054482-16054547,16054691-16054828,16054917-16055015,
            16057098-16057194,16057661-16057761,16057858-16058085,
            16059175-16059381,16059451-16059571,16059921-16059988,
            16060148-16060213,16060396-16060509,16060949-16061300,
            16063571-16063663,16063764-16063922,16064224-16064287,
            16064385-16064577,16064673-16064710,16065510-16065645,
            16065726-16065914,16065994-16066095,16067660-16067777,
            16067861-16067964,16070338-16070346,16071428-16071475,
            16071581-16071676,16072430-16072533,16073964-16074045,
            16076573-16076601,16076708-16076963
          Length = 4246

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 196  VYVFDPSCYFSTPPFDTVLYD-NIRTVLK-DNKTALLSASIQAS 71
            V + D SC   TP FDT + + N+ T  K +   A+L  SI AS
Sbjct: 2535 VSILDSSCGMVTPIFDTTIANINLATHGKFETMNAVLICSISAS 2578


>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 175 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQ 77
           CYF   P +   +  +R +   NKT +LS+ ++
Sbjct: 585 CYFDQLPLEPTTWSKLRRISIVNKTDMLSSVVE 617


>01_06_1201 -
           35380338-35380496,35381200-35381322,35381521-35382066,
           35382285-35382392,35382695-35383225,35383614-35383743,
           35384225-35385081,35385303-35385408,35387119-35387230,
           35389255-35389347,35389723-35389771,35389859-35389897,
           35390671-35390757,35391613-35391873,35391957-35392166,
           35392413-35393507
          Length = 1501

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 25/85 (29%), Positives = 36/85 (42%)
 Frame = -1

Query: 358 PRILRSPPPTXPXIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSSIIGTRVYVFDP 179
           PR   SPPP  P +     A + A++D     A      H +LAL  SS   T   +  P
Sbjct: 61  PRPQSSPPPPGPAMVGAD-AESSAVVD-----AGEG---HGDLALDSSSAASTDPLLHPP 111

Query: 178 SCYFSTPPFDTVLYDNIRTVLKDNK 104
               STP   T + D+   + +D +
Sbjct: 112 PSPSSTPSSPTAIADHDAFIEEDGE 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,958,597
Number of Sequences: 37544
Number of extensions: 166487
Number of successful extensions: 383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)