Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e19
         (854 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    27   0.25 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    25   0.76 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    24   1.8  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    24   1.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.4  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 417 ACRCSCGRASSAWPRP 464
           ACR  C  A++ WP+P
Sbjct: 52  ACRLFCSEAAALWPKP 67


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 420 CRCSCGRASSAWPRP 464
           CR  CG+  + WP+P
Sbjct: 61  CRLVCGKYGALWPQP 75


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/52 (19%), Positives = 23/52 (44%)
 Frame = +2

Query: 443 IFCMASPTSSRAHVESTMGLTLPCAHRVKTLCTARRTVSPRPCWNSRCRRFK 598
           +F  A   +   H+++ + +TL     V+ + T    ++ +P W    +  K
Sbjct: 50  VFYRAKDYAKFIHIKAVVQITLDATLYVQNIYTVLTALTKKPLWFKLLKNLK 101


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/52 (19%), Positives = 23/52 (44%)
 Frame = +2

Query: 443 IFCMASPTSSRAHVESTMGLTLPCAHRVKTLCTARRTVSPRPCWNSRCRRFK 598
           +F  A   +   H+++ + +TL     V+ + T    ++ +P W    +  K
Sbjct: 50  VFYRAKDYAKFIHIKAVVQITLDATLYVQNIYTVLTALTKKPLWFKLLKNLK 101


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 431 LRSCIFCMASPTSSRAH 481
           LRSC  C  + +S+R H
Sbjct: 169 LRSCDLCQKTKSSNRPH 185


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 28   FKNKCRAAREPVAQTV 75
            FKN+C   R P+  T+
Sbjct: 1745 FKNRCGEGRHPLLTTI 1760


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +1

Query: 526 EDAVHGAPHRVPAPVLEQQVPQVQARQALVLVEQ 627
           E  +      +P  +++QQ  Q + R  + ++EQ
Sbjct: 37  ESTMFNGGGEIPQNIIQQQPQQARRRAFVKIIEQ 70


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 632 SNCSTRTRAWRA*TCGTC 579
           +NC+  TR W     G C
Sbjct: 526 ANCTASTRCWEVFMDGIC 543


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,234
Number of Sequences: 336
Number of extensions: 3090
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)