Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e19
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870... 39 0.006
04_03_0629 + 18179065-18179148,18180146-18180287,18180987-181810... 32 0.51
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137... 31 1.2
12_02_1058 - 25735902-25736000,25736085-25736152,25736575-257366... 30 2.7
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865... 30 2.7
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 29 3.6
06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667... 29 3.6
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 29 4.7
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323... 28 8.3
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 28 8.3
03_05_0072 - 20495568-20495635,20495713-20495839,20496119-204963... 28 8.3
>02_05_1140 +
34386042-34386302,34386738-34386917,34386999-34387080,
34387180-34387287,34387442-34387630,34387814-34388010
Length = 338
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = -3
Query: 534 SVFTLWAQGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLDP 403
+V+ QGKVKP++ T+ L + EA + M + +IGK++L P
Sbjct: 295 NVWPAVVQGKVKPVIYKTFPLSEAAEAHKLMEESSHIGKILLIP 338
>04_03_0629 +
18179065-18179148,18180146-18180287,18180987-18181078,
18181272-18181964
Length = 336
Score = 32.3 bits (70), Expect = 0.51
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 522 LWAQGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLD 406
L +GK++ +VDS + L D +A QK D GK+V++
Sbjct: 295 LVGEGKLRTVVDSRFPLGDAAKAWQKSIDGHATGKIVVE 333
>06_01_0175 -
1371089-1371706,1371812-1371994,1372069-1372324,
1372407-1372976,1373423-1373529,1373664-1374136,
1374279-1374372
Length = 766
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 592 VQARQALVLVEQFDRRHLVHLPPRTGSAEEALCLAGHDVR*SIEDVTAHWLQKRIPAV 765
+ +QAL +E F H + +PPRT + + G + + TA WL + IP +
Sbjct: 532 ISMKQALAFLEDFKLGHYMKIPPRTMFMAQ---VVGTSIAAFVYIGTAWWLMETIPNI 586
>12_02_1058 -
25735902-25736000,25736085-25736152,25736575-25736638,
25736838-25736919,25737503-25737561,25737664-25737723,
25737884-25738046,25738236-25738360,25738827-25738859,
25739098-25739160,25739364-25739423,25739972-25740196,
25740272-25740433
Length = 420
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 723 LYGSSNIVTGETKSFFSAARAWW 655
+Y IV + K FSAAR WW
Sbjct: 201 IYNKDGIVVYDGKGLFSAARVWW 223
>10_07_0124 -
13085820-13085997,13086235-13086362,13086475-13086550,
13086726-13086803,13086985-13087064,13087411-13087480,
13087730-13087887,13088225-13088315,13088379-13088455,
13088612-13088686,13088798-13089071,13089911-13090041,
13090154-13090323,13090413-13090971,13091077-13091127
Length = 731
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 807 GVDIVLDCLCGEECNRGYSL 748
G+D + DC CG+E RG SL
Sbjct: 134 GIDPIFDCSCGQEVLRGISL 153
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 29.5 bits (63), Expect = 3.6
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Frame = -3
Query: 846 SDYTSEVRKVTPDGVDIVLDCLCGEECNRGYSLLKPMGRYILYGS-SNIVTGETKSFFSA 670
+D T +R+ PDG+DI D + G + ++ GR ++ G S E + +
Sbjct: 226 NDLTGALRRCFPDGIDIYFDNVGGATLDAALVNMRRGGRVVVCGMISQYNLQEPEGVHNV 285
Query: 669 ARAWWQVDKVSPIKLFDENKSLAGLNLRHLLFQHGRGDTVRRAVHSVFTLWAQGKVKPIV 490
+ + +V +F+ GL + +F+ D + R + +GKV +
Sbjct: 286 IQILSKTIRVEGFAVFNH----FGL---YPMFE----DEMARYL-------KEGKVTVLQ 327
Query: 489 DSTWALEDVGEAMQKMHDRKNIGKLVL 409
D +E EA+ M +N+GKL++
Sbjct: 328 DVVKGIEKASEALIGMFSGRNVGKLLV 354
>06_03_0679 -
23464009-23464381,23464804-23464886,23466537-23466703,
23466821-23467007,23467093-23467311
Length = 342
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 843 DYTSEVRKVTPDGVDIVLDCLCGEECNRGYSLLKPMGRYILYG 715
D S +++ PDG+DI D + GE + + GR L G
Sbjct: 212 DMKSALKRYFPDGIDIYFDNVGGETLEAALANMNTYGRVALCG 254
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +1
Query: 526 EDAVHGAPHRVPAPVLEQQVP--QVQARQALVLVEQFDRRHLVHLPPRTGSAEEALCLAG 699
+D++H P+P +++ QA V+ V + TG +C+ G
Sbjct: 737 DDSLHTVMQNCPSPTAHEEIAFDSSSISQASVICPSMSSAKSVKVSQHTGRIHLYICVPG 796
Query: 700 HDVR 711
HD R
Sbjct: 797 HDSR 800
>08_02_0182 -
13930436-13931245,13931348-13931627,13931788-13932324,
13932482-13932579,13932678-13933118
Length = 721
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 547 PHRVPAPVLEQQVPQVQARQALVLVEQFDRRHLVHLPPRTGSAEEALCLAGHDVR*SIED 726
P + A V+ + + QAL V F H + +PPR+ + LAG V ++
Sbjct: 469 PGKPLANVVFKTYGYISMTQALTFVSDFKLGHYMKIPPRSMFMVQ---LAGTVVASTVHF 525
Query: 727 VTAHWL 744
TA WL
Sbjct: 526 ATAWWL 531
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 518 HRV-KTLCTARRTVSPRPCWNSRCRRFKPARL 610
HR + L A RTV+ RP W C R ARL
Sbjct: 213 HRYPEALADAERTVALRPDWAKGCSRLGAARL 244
>03_05_0072 -
20495568-20495635,20495713-20495839,20496119-20496395,
20496542-20496597
Length = 175
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 689 QRASSALPVRGGKWTR-CLRSNCSTRTRAWRA*TCGT 582
+R SAL R G T+ C+ + + R RAWR C T
Sbjct: 37 RRTMSALASREGDSTKACMWESKNRRARAWRGQECAT 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,438,319
Number of Sequences: 37544
Number of extensions: 428389
Number of successful extensions: 1755
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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