Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e19
(854 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF121361-3|AAD37505.1| 277|Drosophila melanogaster zinc finger ... 33 0.50
AF121360-1|AAD34351.1| 277|Drosophila melanogaster DNZDHHC/NEW1... 33 0.50
BT029602-1|ABL75661.1| 77|Drosophila melanogaster IP17030p pro... 33 0.66
BT021373-1|AAX33521.1| 286|Drosophila melanogaster LP02810p pro... 30 3.5
AE013599-630|AAF59105.1| 286|Drosophila melanogaster CG11635-PA... 30 3.5
AY118361-1|AAM48390.1| 622|Drosophila melanogaster RE07082p pro... 29 6.2
AM412966-1|CAL85589.1| 265|Drosophila melanogaster Fst protein. 29 6.2
AM412965-1|CAL85588.1| 262|Drosophila melanogaster Fst protein. 29 6.2
AM412964-1|CAL85587.1| 266|Drosophila melanogaster Fst protein. 29 6.2
AM412963-1|CAL85586.1| 266|Drosophila melanogaster Fst protein. 29 6.2
AE014298-1223|AAF46406.1| 622|Drosophila melanogaster CG1787-PA... 29 6.2
AE014297-995|AAF54420.1| 286|Drosophila melanogaster CG9434-PA ... 29 6.2
AB059240-1|BAB40791.1| 278|Drosophila melanogaster Frost protein. 29 6.2
AB043874-1|BAB40785.1| 278|Drosophila melanogaster frost protei... 29 6.2
BT029620-1|ABL75679.1| 127|Drosophila melanogaster IP17106p pro... 29 8.1
BT029556-1|ABL75616.1| 127|Drosophila melanogaster IP16806p pro... 29 8.1
AE014297-606|AAF54024.1| 74|Drosophila melanogaster CG17934-PA... 29 8.1
>AF121361-3|AAD37505.1| 277|Drosophila melanogaster zinc finger
protein protein.
Length = 277
Score = 33.1 bits (72), Expect = 0.50
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 686 RASSALPVRGGKWTRCLRSNCSTRTRAWRA*TCGTCCSSTGAGTRCGAPCTASSL--CG 516
R SA +R WT C+R C+TR R WR + GA T C C+ + + CG
Sbjct: 198 RRCSACSLRPSWWTSCMRF-CTTR-RPWRRYSRRAPIVQIGASTSCWRMCSDADIRRCG 254
>AF121360-1|AAD34351.1| 277|Drosophila melanogaster DNZDHHC/NEW1
zinc finger protein11 protein.
Length = 277
Score = 33.1 bits (72), Expect = 0.50
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 686 RASSALPVRGGKWTRCLRSNCSTRTRAWRA*TCGTCCSSTGAGTRCGAPCTASSL--CG 516
R SA +R WT C+R C+TR R WR + GA T C C+ + + CG
Sbjct: 198 RRCSACSLRPSWWTSCMRF-CTTR-RPWRRYSRRAPIVQIGASTSCWRMCSDADIRRCG 254
>BT029602-1|ABL75661.1| 77|Drosophila melanogaster IP17030p
protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.66
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 605 WRA*TCGTCCSSTGAGTRCGAPCTASSL 522
WR CG+ CS+T + T CG+ C+ ++
Sbjct: 27 WRHADCGSLCSATNSSTDCGSLCSGRTV 54
>BT021373-1|AAX33521.1| 286|Drosophila melanogaster LP02810p
protein.
Length = 286
Score = 30.3 bits (65), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 509 PCAHRVKTLCTARRTVSPRPCWNSRCRRFKPAR 607
P H KT RR +P PCW S C++ K A+
Sbjct: 180 PRCHAAKTPSCCRRLCAPMPCW-SDCKQPKLAK 211
>AE013599-630|AAF59105.1| 286|Drosophila melanogaster CG11635-PA
protein.
Length = 286
Score = 30.3 bits (65), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 509 PCAHRVKTLCTARRTVSPRPCWNSRCRRFKPAR 607
P H KT RR +P PCW S C++ K A+
Sbjct: 180 PRCHAAKTPSCCRRLCAPMPCW-SDCKQPKLAK 211
>AY118361-1|AAM48390.1| 622|Drosophila melanogaster RE07082p
protein.
Length = 622
Score = 29.5 bits (63), Expect = 6.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 414 RACRCSCGRASSAWPRPHPRGPTWSRR 494
R CR SCG+ + WP P + T S R
Sbjct: 81 RDCRLSCGKYGAIWPMPTGKECTISHR 107
>AM412966-1|CAL85589.1| 265|Drosophila melanogaster Fst protein.
Length = 265
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 517 GAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVP 398
G GQG H H G G GH Q H RP P P
Sbjct: 64 GLGQGNGHGNNHHGHHGNNHGHGNG---QGHGGQRPPPPP 100
>AM412965-1|CAL85588.1| 262|Drosophila melanogaster Fst protein.
Length = 262
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 517 GAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVP 398
G GQG H H G G GH Q H RP P P
Sbjct: 64 GLGQGNGHGNNHHGHHGNNHGHGNG---QGHGGQRPPPPP 100
>AM412964-1|CAL85587.1| 266|Drosophila melanogaster Fst protein.
Length = 266
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 517 GAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVP 398
G GQG H H G G GH Q H RP P P
Sbjct: 64 GLGQGNGHGNNHHGHHGNNHGHGNG---QGHGGQRPPPPP 100
>AM412963-1|CAL85586.1| 266|Drosophila melanogaster Fst protein.
Length = 266
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 517 GAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVP 398
G GQG H H G G GH Q H RP P P
Sbjct: 64 GLGQGNGHGNNHHGHHGNNHGHGNG---QGHGGQRPPPPP 100
>AE014298-1223|AAF46406.1| 622|Drosophila melanogaster CG1787-PA
protein.
Length = 622
Score = 29.5 bits (63), Expect = 6.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 414 RACRCSCGRASSAWPRPHPRGPTWSRR 494
R CR SCG+ + WP P + T S R
Sbjct: 81 RDCRLSCGKYGAIWPMPTGKECTISHR 107
>AE014297-995|AAF54420.1| 286|Drosophila melanogaster CG9434-PA
protein.
Length = 286
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 517 GAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVP 398
G GQG H H G G GH Q H RP P P
Sbjct: 82 GLGQGNGHGNNHHGHHGNSHGHGNG---QGHGGQRPPPPP 118
>AB059240-1|BAB40791.1| 278|Drosophila melanogaster Frost protein.
Length = 278
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 517 GAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVP 398
G GQG H H G G GH Q H RP P P
Sbjct: 82 GLGQGNGHGNNHHGHHGNNHGHGNG---QGHGGQRPPPPP 118
>AB043874-1|BAB40785.1| 278|Drosophila melanogaster frost protein
protein.
Length = 278
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 517 GAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVP 398
G GQG H H G G GH Q H RP P P
Sbjct: 82 GLGQGNGHGNNHHGHHGNNHGHGNG---QGHGGQRPPPPP 118
>BT029620-1|ABL75679.1| 127|Drosophila melanogaster IP17106p
protein.
Length = 127
Score = 29.1 bits (62), Expect = 8.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 593 TCGTCCSSTGAGTRCGAPCTASSLC 519
+CG+ C G G CG+ C S C
Sbjct: 14 SCGSGCKPCGGGGCCGSCCVGGSCC 38
>BT029556-1|ABL75616.1| 127|Drosophila melanogaster IP16806p
protein.
Length = 127
Score = 29.1 bits (62), Expect = 8.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 593 TCGTCCSSTGAGTRCGAPCTASSLC 519
+CG+ C G G CG+ C S C
Sbjct: 14 SCGSGCKPCGGGGCCGSCCVGGSCC 38
>AE014297-606|AAF54024.1| 74|Drosophila melanogaster CG17934-PA
protein.
Length = 74
Score = 29.1 bits (62), Expect = 8.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 590 CGTCCSSTGAGTRCGAPCTASSLCG 516
CG+CCS G+ C APC CG
Sbjct: 28 CGSCCSPCGS---CCAPCGPCGPCG 49
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,772,224
Number of Sequences: 53049
Number of extensions: 670235
Number of successful extensions: 2311
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2311
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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