Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e19
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    29   3.2  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        29   3.2  
AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical ...    29   5.6  
U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF067219-5|AAC17029.3|  241|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    28   9.7  
AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical ...    28   9.7  

>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -2

Query: 217  SPEGVKHTNHRIRLF*C*SCCGTRGVLSLCCLVLYYIVFVLSDYN-PKRPSVRPAL 53
            S  GV  T  R R   C  CC  RG L  CC+  +    +       K+P  +P L
Sbjct: 1828 SDVGVYSTKKRQRGVKCPKCCTRRGCLCKCCIFCFETKCLCGKRKVKKKPFPKPVL 1883


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -2

Query: 217  SPEGVKHTNHRIRLF*C*SCCGTRGVLSLCCLVLYYIVFVLSDYN-PKRPSVRPAL 53
            S  GV  T  R R   C  CC  RG L  CC+  +    +       K+P  +P L
Sbjct: 1828 SDVGVYSTKKRQRGVKCPKCCTRRGCLCKCCIFCFETKCLCGKRKVKKKPFPKPVL 1883


>AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical
           protein D2063.1 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 474 LEDVGEAMQKMHDRKNIGKLVLDPSL 397
           LEDV E   KMHD K   ++V+D SL
Sbjct: 301 LEDVAEVYTKMHDGKINSRVVVDFSL 326


>U41034-8|AAA82382.1|  669|Caenorhabditis elegans Hypothetical
           protein M02D8.5 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = -3

Query: 762 RGYSLLKPMGRYILYGSSNIVTGETKSFFSAARAWWQVDKVSPIKLFDENKSLAGLNLRH 583
           RGYSL        +Y S   +  +   F++A  ++W    VSP+ +   +KSL    L  
Sbjct: 341 RGYSLNNETDSLTVYDSYQHIVVQMMPFYAAFTSFWAT--VSPVNVQFISKSLTAFPLD- 397

Query: 582 LLFQHGRGDTV 550
              Q GRG +V
Sbjct: 398 ---QIGRGFSV 405


>AF067219-5|AAC17029.3|  241|Caenorhabditis elegans Hypothetical
           protein R12E2.8 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 717 HRGCNGPLASEANTRGCTPLRRDN 788
           H  C+GPL   +  R C  LRR+N
Sbjct: 187 HVCCDGPLEKASTVRACCYLRREN 210


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
           protein B0511.12 protein.
          Length = 1634

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 489 DSTWALEDVGEAMQKMHDRKNIG 421
           DS W +E + E ++  H R+N G
Sbjct: 119 DSMWQMEQIMELIENTHSRRNFG 141


>AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical
           protein F36H9.1 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 792 LDCLCGEE-CNRGYSLLKPMGRYILYGSSNIVTGETK 685
           L C+C  E CNR  ++  P+G  I Y S    +  TK
Sbjct: 376 LQCICDTEFCNREQNIEVPLGNVICYLSKRDQSERTK 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,018
Number of Sequences: 27780
Number of extensions: 311052
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)