Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12e19
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 124 GNTV--IGRRASRSSFNIKIIECGGLYASLLPANDS 225
           G T+  IGR+    S NIKII      + L P++DS
Sbjct: 217 GGTISGIGRKLKELSPNIKIIAVDPKGSILDPSSDS 252


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 519 WAQGKVKPIVDSTWALEDVGEAMQKMHD 436
           W   K+K I+D    LE+     Q  HD
Sbjct: 279 WFLHKMKNIIDYYLVLENTDHTKQLSHD 306


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 713 HLTS*PARQRASSALPVRGGKWTRCLRSNCSTRTRA 606
           HLTS PAR  +S A   +  +    L S  ST  R+
Sbjct: 674 HLTSPPARSPSSQAQASQCPQTASLLSSTHSTLARS 709


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 668 PVRGGKWT 645
           P+RGG+WT
Sbjct: 380 PIRGGEWT 387


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 520 QSEDAVHGAPHRVPAPVLEQQVPQ 591
           QS+    GAP   P+P    Q PQ
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQ 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,942
Number of Sequences: 438
Number of extensions: 3623
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)