Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12e16
(887 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6; Nucle... 211 2e-53
UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7; Nucle... 147 4e-34
UniRef50_P24729 Cluster: GP16 protein; n=12; Nucleopolyhedroviru... 101 3e-20
UniRef50_Q91BA2 Cluster: Calyx protein; n=2; Nucleopolyhedroviru... 51 5e-05
UniRef50_Q287M3 Cluster: CALYX/PEP; n=3; Nucleopolyhedrovirus|Re... 44 0.007
UniRef50_A0EZ11 Cluster: Calyx/pep; n=2; Nucleopolyhedrovirus|Re... 41 0.037
UniRef50_Q461U1 Cluster: Orf125; n=2; Nucleopolyhedrovirus|Rep: ... 40 0.085
UniRef50_Q0N3Y8 Cluster: CALYX/PEP; n=6; Nucleopolyhedrovirus|Re... 40 0.085
UniRef50_A0EZ02 Cluster: Gp16; n=1; Ecotropis obliqua NPV|Rep: G... 39 0.20
UniRef50_Q758R7 Cluster: AEL314Wp; n=2; Saccharomycetaceae|Rep: ... 38 0.34
UniRef50_P36865 Cluster: Polyhedral envelope protein; n=2; Lyman... 35 3.2
UniRef50_P47025 Cluster: Mitochondrial division protein 1; n=2; ... 35 3.2
UniRef50_Q23FU7 Cluster: Putative uncharacterized protein; n=1; ... 34 5.6
UniRef50_Q6FPB2 Cluster: GPI ethanolamine phosphate transferase ... 34 5.6
UniRef50_Q6MCD6 Cluster: Putative uncharacterized protein; n=1; ... 33 7.4
UniRef50_A3JK22 Cluster: Putative uncharacterized protein; n=4; ... 33 9.7
UniRef50_A7TNS8 Cluster: Putative uncharacterized protein; n=1; ... 33 9.7
>UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6;
Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 252
Score = 211 bits (516), Expect = 2e-53
Identities = 95/97 (97%), Positives = 97/97 (100%)
Frame = -3
Query: 585 MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVK 406
MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVK
Sbjct: 1 MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVK 60
Query: 405 YMVDIYGASVLILRTPCSFADQLLSTFIANNYLCYFY 295
YMVDIYGA+VL+LRTPCSFADQLLSTFIANNYLCYFY
Sbjct: 61 YMVDIYGAAVLVLRTPCSFADQLLSTFIANNYLCYFY 97
Score = 86.2 bits (204), Expect = 1e-15
Identities = 45/58 (77%), Positives = 46/58 (79%)
Frame = -3
Query: 174 QIFDALEKIRHQNDMLMXXXXXXXXXXXXQFLELSNVMTGVRNQNVQLLAALETAKDV 1
QIFDALEKIRHQNDMLM QFLELSN+MTGVRNQNVQLLAALETAKDV
Sbjct: 151 QIFDALEKIRHQNDMLMSNVNQINLNQTNQFLELSNMMTGVRNQNVQLLAALETAKDV 208
>UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7;
Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
Orgyia pseudotsugata multicapsid polyhedrosis virus
(OpMNPV)
Length = 297
Score = 147 bits (356), Expect = 4e-34
Identities = 74/106 (69%), Positives = 81/106 (76%), Gaps = 11/106 (10%)
Frame = -3
Query: 585 MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGG------S 424
M P NNVMFDDASV+WID DYIYQN KMPL FQQLLF+IPSKHRKMIND G S
Sbjct: 1 MTPNNNVMFDDASVMWIDADYIYQNSKMPLSTFQQLLFSIPSKHRKMINDIGNPACNPPS 60
Query: 423 C-----HNTVKYMVDIYGASVLILRTPCSFADQLLSTFIANNYLCY 301
C ++TVKYMVDIYGA+VL LR P F+DQLL+TF ANNYL Y
Sbjct: 61 CSFPPSNSTVKYMVDIYGAAVLALRCPSLFSDQLLTTFTANNYLSY 106
Score = 55.6 bits (128), Expect = 2e-06
Identities = 29/57 (50%), Positives = 36/57 (63%)
Frame = -3
Query: 174 QIFDALEKIRHQNDMLMXXXXXXXXXXXXQFLELSNVMTGVRNQNVQLLAALETAKD 4
QI DALEK+ Q+D+++ QFLELSN + VR QN Q+LAALET KD
Sbjct: 129 QILDALEKLARQSDLVVNSLNQISLNQSNQFLELSNTLNTVRAQNAQILAALETTKD 185
>UniRef50_P24729 Cluster: GP16 protein; n=12;
Nucleopolyhedrovirus|Rep: GP16 protein - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 106
Score = 101 bits (241), Expect = 3e-20
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = -2
Query: 847 KTFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKI 701
K FSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKI
Sbjct: 41 KHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKI 89
Score = 35.9 bits (79), Expect = 1.4
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 885 IKSILVVMYESMEKHF 838
IKSILVVMYESMEKHF
Sbjct: 28 IKSILVVMYESMEKHF 43
>UniRef50_Q91BA2 Cluster: Calyx protein; n=2;
Nucleopolyhedrovirus|Rep: Calyx protein - Spodoptera
litura multicapsid nucleopolyhedrovirus (SpltMNPV)
Length = 344
Score = 50.8 bits (116), Expect = 5e-05
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = -3
Query: 576 TNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMIND--AGGSCH-NTVK 406
T V+ + + ++W+ D + Q L++P Q ++P +HR+ + D +C + K
Sbjct: 15 TITVLVEPSWIVWLSADELVQLLRLPGSCVIQ---SVPPRHRRCLGDFRCSHTCRFDNNK 71
Query: 405 YMVDIYGASVLILRTPCSFADQLLSTFIANNY 310
VD+ G S+L R+ C+ D LL+ F+A Y
Sbjct: 72 VFVDLLGLSILCSRSNCNICDYLLTAFVAEVY 103
>UniRef50_Q287M3 Cluster: CALYX/PEP; n=3; Nucleopolyhedrovirus|Rep:
CALYX/PEP - Agrotis segetum nuclear polyhedrosis virus
(AsNPV)
Length = 341
Score = 43.6 bits (98), Expect = 0.007
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = -3
Query: 570 NVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMIND--AGGSC-HNTVKYM 400
++ FD +LW+ D + L++P +L T+ +H+K D C H+ K
Sbjct: 14 SLFFDQCCILWVSADDVLNLLRLP----HAVLQTVQPRHKKCWVDFRCSHHCSHDPNKIF 69
Query: 399 VDIYGASVLILRTPCSFADQLLSTFIANNY 310
+D+YG L R AD L++ F++ Y
Sbjct: 70 IDLYGLGNLCNRVNSPVADYLMTLFVSEAY 99
>UniRef50_A0EZ11 Cluster: Calyx/pep; n=2; Nucleopolyhedrovirus|Rep:
Calyx/pep - Ecotropis obliqua NPV
Length = 330
Score = 41.1 bits (92), Expect = 0.037
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = -3
Query: 558 DDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTV------KYMV 397
D + VLW+ + + Q L++P Q +IP +H+K ND C N+V + +
Sbjct: 20 DQSWVLWVCAEDVLQLLRLPPSVLQ----SIPLRHKKCWNDF--RCPNSVYRLDGSRLFI 73
Query: 396 DIYGASVLILRTPCSFADQLLSTFIANNY 310
DIYG L R + +D L + FIA Y
Sbjct: 74 DIYGLGNLCNRVNSNQSDYLCTLFIAEIY 102
>UniRef50_Q461U1 Cluster: Orf125; n=2; Nucleopolyhedrovirus|Rep:
Orf125 - Trichoplusia ni SNPV
Length = 95
Score = 39.9 bits (89), Expect = 0.085
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -2
Query: 841 FSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKI 701
F +V ++ + DT L+ +QN T T+D VV NG KI +++KI
Sbjct: 43 FDAIVYDMAKFRNDTMFYLNRIQNTTKITYDLVVTNGNKIDVINQKI 89
>UniRef50_Q0N3Y8 Cluster: CALYX/PEP; n=6; Nucleopolyhedrovirus|Rep:
CALYX/PEP - Clanis bilineata nucleopolyhedrosis virus
Length = 338
Score = 39.9 bits (89), Expect = 0.085
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Frame = -3
Query: 567 VMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCH--NTVKY--- 403
V + + V+W+ + + Q L++P Q +I +H+K D C+ N +Y
Sbjct: 15 VFVEPSWVVWVSVEEVLQILRLPNSIVQ----SIAPRHKKCYLDFNNHCNTNNNCRYDNN 70
Query: 402 --MVDIYGASVLILRTPCSFADQLLSTFIANNY 310
VD+Y L + ADQL++ FIA+ Y
Sbjct: 71 KLFVDLYALGFLCSKVTSQAADQLMTCFIADLY 103
>UniRef50_A0EZ02 Cluster: Gp16; n=1; Ecotropis obliqua NPV|Rep: Gp16
- Ecotropis obliqua NPV
Length = 98
Score = 38.7 bits (86), Expect = 0.20
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2
Query: 841 FSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKI 701
FSN+ +EI LK TF + LQN+T + ++ N KI L+ KI
Sbjct: 43 FSNLHNEISFLKNGTFRLFEQLQNSTKHSIKLIMNNSNKIDVLNNKI 89
>UniRef50_Q758R7 Cluster: AEL314Wp; n=2; Saccharomycetaceae|Rep:
AEL314Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 715
Score = 37.9 bits (84), Expect = 0.34
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = -2
Query: 871 SGHVRIYGKTFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLD 710
S V IY TF + +DEI +L + ++S Q+ TIR WD + NGK + LD
Sbjct: 493 SDEVCIY--TFDSHIDEITALSFEANNLVSGSQDRTIRQWD--LNNGKCVQTLD 542
>UniRef50_P36865 Cluster: Polyhedral envelope protein; n=2;
Lymantria dispar MNPV|Rep: Polyhedral envelope protein -
Lymantria dispar multicapsid nuclear polyhedrosis virus
(LdMNPV)
Length = 312
Score = 34.7 bits (76), Expect = 3.2
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = -3
Query: 528 DYIYQNLKMPLQAFQQLLFTIPSKHRKMIND-------AGGSCHNTVKYMVDIYGASVLI 370
D + Q L++P + I ++H+K ND GGS + + VD+YG L
Sbjct: 31 DEVVQLLRLPAN----IANGIHTRHKKCWNDFRGGGGGGGGSRVDGTRAFVDLYGLGYLC 86
Query: 369 LRTPCSFADQLLSTFIANNY 310
RT + AD L + F+A Y
Sbjct: 87 NRTNSTLADYLCTLFVAEAY 106
>UniRef50_P47025 Cluster: Mitochondrial division protein 1; n=2;
Saccharomyces cerevisiae|Rep: Mitochondrial division
protein 1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 714
Score = 34.7 bits (76), Expect = 3.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 844 TFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLD 710
TF DE+ +L D ++S Q+ TIR WD +++GK + +D
Sbjct: 497 TFEAHTDEVTALSLDPSFLVSGSQDRTIRQWD--LRSGKCLQTID 539
>UniRef50_Q23FU7 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1142
Score = 33.9 bits (74), Expect = 5.6
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Frame = +1
Query: 283 SATTVK-VAQIIVCNKCAQQLVGKRARRSQNQ-NGRSVNVHHVFDRVMTRSARIVDHFSM 456
SAT K + +I VCN C Q + + +Q + + H++DR++ + + F +
Sbjct: 640 SATQNKDIGEIFVCNTCKQSCQNQNSNNNQKGFEKQYYEIKHLYDRLLIKYYNVQKKFQI 699
Query: 457 FRWDGEQKLLKRLQRHF*ILINVIRVDPKNRRVVEHNVIRRLHISK 594
G+ + L F I+ V + N+ + LH K
Sbjct: 700 LEESGKIRQTGNLNSSFQIIQQVHTLFCLNQISPQEGSFEELHEQK 745
>UniRef50_Q6FPB2 Cluster: GPI ethanolamine phosphate transferase 2;
n=1; Candida glabrata|Rep: GPI ethanolamine phosphate
transferase 2 - Candida glabrata (Yeast) (Torulopsis
glabrata)
Length = 842
Score = 33.9 bits (74), Expect = 5.6
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +3
Query: 657 LSRLLTTPFF----VNSTLIFSSR-LDIFLPFFTTASHVRIVLFCKLLNIINVSVLRESI 821
+SRL+ FF ++ +L SR + IFL F T + ++ + LF +++N I V ++RE
Sbjct: 635 VSRLMIQKFFQVSDISKSLAVVSRYVTIFLVFQTPSHNIGLFLFFEIINEITVHIIRERY 694
Query: 822 SSTTL 836
S L
Sbjct: 695 QSDYL 699
>UniRef50_Q6MCD6 Cluster: Putative uncharacterized protein; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein - Protochlamydia
amoebophila (strain UWE25)
Length = 868
Score = 33.5 bits (73), Expect = 7.4
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -3
Query: 576 TNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGG 427
T+NV F+D+ ++++D DY+Y + A QLL +H ++ D G
Sbjct: 392 TSNVKFNDSEMIYLDPDYLYSKM-----AIYQLLVLDVLEHGAIVRDCQG 436
>UniRef50_A3JK22 Cluster: Putative uncharacterized protein; n=4;
Proteobacteria|Rep: Putative uncharacterized protein -
Marinobacter sp. ELB17
Length = 345
Score = 33.1 bits (72), Expect = 9.7
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 295 VKVAQIIVCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHF-SMFRWDG 471
V +Q CN L G+RA+ S+N+ H DR R R VDH+ + WD
Sbjct: 168 VITSQTRFCNSRTLVLTGERAQESKNRAKYLSFEPHRTDRRAGRLGRHVDHWRPVHAWD- 226
Query: 472 EQKLLKRLQRH 504
E+++ + ++RH
Sbjct: 227 EKQVWEIMERH 237
>UniRef50_A7TNS8 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 669
Score = 33.1 bits (72), Expect = 9.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 826 DEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLD 710
DEI S+ D F +L+ Q+ TI+ WD + GK + D
Sbjct: 456 DEISSISYDNFNLLTGSQDKTIKHWDLI--TGKCVQTFD 492
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,257,934
Number of Sequences: 1657284
Number of extensions: 14491852
Number of successful extensions: 38601
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 37185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38591
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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